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Table 3 Averaged QTL position, mean curve parameters, log-likelihood values, maximum log-likelihood ratios (maxLR), entropy and quadratic losses and their standard errors (given in parentheses) for two QTL genotypes in a backcross population based on 100 simulation replicates (C1 with n = 400 and σ2 = 2, 4).

From: Functional mapping of reaction norms to multiple environmental signals through nonparametric covariance estimation

  

QTL

QTL genotype 1

QTL genotype 2

log-likelihood

   

Covariance

σ 2

Location

α ^ 1

P ^ m 1 ( 20 )

θ ^ 1

α ^ 2

P ^ m 2 ( 20 )

θ ^ 2

H 0

H 1

max LR

L E

L Q

ΣAR(1)

2

72.40

0.02

2.05

0.89

0.01

1.52

0.87

-5437

-5373

128.51

19.45

684.37

  

(0.44)

(0.00)

(0.01)

(0.01)

(0.00)

(0.02)

(0.01)

(7.36)

(7.31)

(2.45)

(0.05)

(4.44)

 

4

74.20

0.02

2.11

0.88

0.01

1.52

0.84

-8175

-8141

65.55

19.44

683.82

  

(0.69)

(0.00)

(0.02)

(0.01)

(0.00)

(0.03)

(0.02)

(7.32)

(7.31)

(1.80)

(0.05)

(4.46)

C 1

2

71.96

0.02

2.01

0.90

0.01

1.54

0.88

-4088

-4021

133.41

0.01

0.13

  

(0.29)

(0.00)

(0.01)

(0.00)

(0.00)

(0.02)

(0.01)

(7.17)

(7.16)

(2.15)

(0.00)

(0.02)

 

4

71.96

0.02

2.03

0.89

0.01

1.57

0.86

-6822

-6788

69.07

0.01

0.13

  

(0.44)

(0.00)

(0.01)

(0.01)

(0.00)

(0.03)

(0.02)

(7.16)

(7.16)

(1.57)

(0.00)

(0.02)

N P

2

72.16

0.02

2.01

0.89

0.01

1.54

0.87

-3967

-3912

109.79

0.53

1.05

  

(0.29)

(0.00)

(0.01)

(0.00)

(0.00)

(0.02)

(0.01)

(6.87)

(6.89)

(1.66)

(0.00)

(0.01)

 

4

71.64

0.02

2.01

0.89

0.01

1.57

0.84

-6713

-6684

59.92

0.53

1.04

  

(0.49)

(0.00)

(0.01)

(0.01)

(0.00)

(0.03)

(0.02)

(6.89)

(6.93)

(1.27)

(0.00)

(0.01)

 

True:

72.00

0.02

2.00

0.90

0.01

1.50

0.90

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