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Table 5 Frequency of non-redundant uniESTs-derived SSR motifs

From: Analysis of expression sequence tags from a full-length-enriched cDNA library of developing sesame seeds (Sesamum indicum)

Repeats 4 5 6 7 8 9 10 11 12 13 14 15 > 15 total
AC/GT - - 36 15 11 9 6 2 1      80
AG/CT - - 99 54 35 25 23 15 6 5 6 2 5 275
AT/AT - - 28 9 7 3         47
CG/CG - - 1            1
AAC/GTT 217 40 13 3      1      274
AAG/CTT 240 31 9 4 1 3   3 1 3 1   2 298
AAT/ATT 74 13 2 1           90
ACC/GGT 134 22 13 4 4 1         178
ACG/CTG 77 32 3 7 2   1        122
ACT/ATG 53 8 6 8           75
AGC/CGT 108 18 12 3 8 1         150
AGG/CCT 91 22 3   1 1         118
AGT/ATC 31 18 3    2 3       1 58
CCG/CGG 53 23 3   1          80
AAAG/CTTT 5 1 1 1           8
AAAT/ATTT 6              6
AACC/GGTT 8              8
AACG/CTTG 1 1   1           3
AACT/ATTG 1              1
AAGC/CGTT    1            1
AAGG/CCTT   5             5
AAGT/ATTC 12              12
AATC/AGTT 1              1
AATT/AATT 1              1
ACAG/CTGT 5   1            6
ACAT/ATGT 2   5            7
ACGC/CGTG 3              3
ACGT/ATGC 1              1
ACTC/AGTG 4 2 2            8
ACTG/ACTG   2             2
AGAT/ATCT 2              2
AGCC/CGGT    1 1           2
AGGT/ATCC 6 2 1 1           10
AGTC/AGTC 2              2
AGAGG/CCTCT -   5            5
AGGGT/ATCCC - 2             2
AACAAG/CTTGTT -   1            1
AAGTAG/ATCTTC - 1 1            2
ACCGAG/CTCTGG -             1 1
AGCTCC/AGGTCG - 1             1
  1. Non-redundant SSR motifs were derived from 32,421 uniESTs.
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