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Table 3 Simple sequence repeats found by two software programs in the unigene set of full-length cDNA sequences.

From: Construction and EST sequencing of full-length, drought stress cDNA libraries for common beans (Phaseolus vulgaris L.)

SSR class

Repeat Finder

%

SciRoKo w/o mono-nt

%

SciRoKo w/mono-nt

%

Mono-nt

0

0

0

0.0

468

24.2

Di-nt

29

16.6

322

22.0

322

16.7

Tri-nt

89

50.9

562

38.4

562

29.1

Tetra-nt

28

16.0

104

7.1

104

5.4

Penta-nt

13

7.4

193

13.2

193

10.0

Hexa-nt

16

9.1

283

19.3

283

14.6

Total

175

100

1464

100

1932

100

  1. Comparison of RepeatFinder and SciRoKO software shown in number of repeats found and percentage of total for each SSR class from mono-nucleotide (nt) repeat to hexa-nt repeat.
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BMC Plant Biology

ISSN: 1471-2229

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