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Table 3 Simple sequence repeats found by two software programs in the unigene set of full-length cDNA sequences.

From: Construction and EST sequencing of full-length, drought stress cDNA libraries for common beans (Phaseolus vulgaris L.)

SSR class Repeat Finder % SciRoKo w/o mono-nt % SciRoKo w/mono-nt %
Mono-nt 0 0 0 0.0 468 24.2
Di-nt 29 16.6 322 22.0 322 16.7
Tri-nt 89 50.9 562 38.4 562 29.1
Tetra-nt 28 16.0 104 7.1 104 5.4
Penta-nt 13 7.4 193 13.2 193 10.0
Hexa-nt 16 9.1 283 19.3 283 14.6
Total 175 100 1464 100 1932 100
  1. Comparison of RepeatFinder and SciRoKO software shown in number of repeats found and percentage of total for each SSR class from mono-nucleotide (nt) repeat to hexa-nt repeat.
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