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Table 4 Differentially expressed genes (P < 0.05, ≥1.75-fold) in Chardonnay grapevine berries all along the investigated ripening periods of the 2005 and 2006 growing seasons.

From: Transcriptional analysis of late ripening stages of grapevine berry

Putative function Grape Microarray Accession Number (Vv_#) Grape Nucleotide Accession Number (mRNA) Grape Gene Accession Number (GSVIVT#) Most Homologous ArabidopsisSequence WBB average ratio (TH vs TH-7) p-value WBB average ratio (TH+10 vs TH) p-value DSB average ratio
(TH vs TH-7)
p-value DSB average ratio
(TH+10 vs TH)
p-value
Aroma related genes             
Carotenoid cleavage dioxygenase 4a (VvCCD4a) Vv_10003015 XM_002268368 GSVIVT01036862001 At4g19170 0.999 2.00E-04 1.219 9.00E-05 1.071 0.00041 1.018 0.00022
Phenylpropanoid/lignin genes             
Phenylalanine ammonia lyase (VvPAL1) Vv_10000977 XM_002281763 GSVIVT01025703001 At2g37040 1.691 6.00E-05 1.076 7.00E-04 1.052 0.00107 1.497 0.00031
Phenylalanine ammonia lyase (VvPAL2) Vv_10000978 AB015871 GSVIVT01024306001 At3g53260 1.858 0.00013 1.046 0.00069 1.234 0.00025 1.578 0.00024
Response to dessication             
Galactinol synthase (VvGolS) Vv_10000327 XM_002262669 GSVIVT01017634001 At1g56600 -1.307 0.00057 -0.99 0.00142 -1.462 0.00057 -1.107 0.00053
Late embryogenesis abundant protein
(VvLEA1)
Vv_10001081 XM_002283966 GSVIVT01033739001 At3g53040 -1.11 3.00E-04 -1.193 0.00118 -1.378 2.00E-04 -1.071 0.00041
Late embryogenesis abundant protein Vv_10001082 AM474201 GSVIVT01033739001 At3g53040 -1.271 0.00053 -1.3 0.00017 -1.559 0.00016 -1.27 1.00E-04
Pathogenesis-related genes             
Pathogenesis-related protein 10 Vv_10010887 XM_002274581 GSVIVT01035059001 - 1.957 0.00178 2.077 0.0022 1.375 0.00037 2.115 0.00055
Dirigent-like protein
(VvDIR-like)
Vv_10002588 XM_002285641 GSVIVT01025392001 At3g13650 1.979 0.00087 1.81 0.00053 1.377 0.00456 1.734 4.00E-04
Hormonal control             
Histidine kinase receptor (VvHKR) Vv_10014467 FJ822975 GSVIVT01030060001 At5g35750 -0.943 0.00023 -0.845 0.00031 -0.826 0.00033 -0.94 0.00032
Unknown function             
Unknown gene Vv_10014451 XM_002270095 GSVIVT01010993001 At4g25010 2.263 3.00E-05 0.982 0.00021 1.757 3.00E-05 1.471 6.00E-05
Unknown gene Vv_10002806 XM_002273032 GSVIVT01038103001 At1g65260 1.375 0.00014 0.884 0.00106 1.01 0.00122 1.095 0.00058
Unknown gene Vv_10011055 XM_002284158 - - -0.849 0.00238 -0.811 0.00091 -0.838 0.00113 -1.032 0.00115
  1. Genes are organized in functional categories. Ratio values are presented as log2. DSB, densimetrically sorted berries; TH-7, 7-days before theoretical harvest; TH, theoretical harvest; TH+10, 10-days after harvest; WBB, whole bunch berries.