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Table 2 Allelic configuration of genes associated with responses to vernalization and photoperiod in the genotypes selected for expression analysis

From: Adaptation of barley to mild winters: A role for PPDH2

Vernalization and photoperiod genes

Genotype

VRNH1 a

VRNH2 b

VRNH3

PPDH1 e

PPDH2 f

   

Promoterc

Intron 1d

  
   

SNP927

Indel 1

Indel 2

   

Plaisant

vrnh1

VRNH2

C

139

142

TC

PPDH1

ppdH2

Rebelle

vrnh1

VRNH2

C

135

146

AG

PPDH1

ppdH2

Arlois

vrnh1

VRNH2

C

139

142

TC

PPDH1

PPDH2

Hispanic

vrnh1

VRNH2

C

135

146

AG

PPDH1

PPDH2

SBCC106

VRNH1-6

VRNH2

C

139

142

TC

PPDH1

PPDH2

SBCC016

VRNH1-6

VRNH2

C

139

142

AG

PPDH1

PPDH2

SBCC058

VRNH1-4

VRNH2

C

139

142

TC

PPDH1

PPDH2

SBCC114

VRNH1-4

VRNH2

C

139

142

AG

PPDH1

PPDH2

  1. a Alleles based on the size of intron 1 [12].
  2. b Presence/absence of HvZCCT [15].
  3. c Promoters identified previously [23].
  4. d Alleles based on two SNPs in intron 1, as reported previously [20].
  5. e Alleles based on SNP22 [25].
  6. f Presence/absence of PPDH2 [13].
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BMC Plant Biology

ISSN: 1471-2229

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