Table 2 EST database size and Overall occurrences of SSRs, percentages and average length motifs per species
From: In silicocomparative analysis of SSR markers in plants
Species | Number of SSR loci | SSR/EST database (%) | Average motif length (bp) | EST sequences with SSRs (%) | N. of seq. containing more than one SSR (%) | Single SSRs | Compound SSRs |
|---|---|---|---|---|---|---|---|
Chlamydomonas reinhardtii | 980 | 2.41 | 33.21 | 886 (2.19) | 94 (9.78) | 899 | 81 |
Mesostigma viride | 81 | 1.26 | 34.12 | 73 (1.14) | 8 (9.87) | 73 | 8 |
Marchantia polymorpha | 437 | 4.33 | 22.56 | 436 (4.32) | 1 (0.52) | 425 | 12 |
Syntrichia ruralis | 190 | 2.67 | 23.84 | 149 (2.09) | 41 (10.09) | 189 | 1 |
Physcomitrella patens | 2753 | 3.46 | 24.20 | 2577 (3.24) | 176 (6.6) | 2670 | 83 |
Selaginella spp. | 968 | 4.66 | 23.71 | 868 (4.38) | 100 (11.13) | 927 | 41 |
Adiantum capillus-veneris | 749 | 4.64 | 31.14 | 599 (3.71) | 150 (20.86) | 624 | 125 |
Gnetum gnemon | 212 | 3.48 | 23.62 | 195 (3.21) | 17 (8.45) | 203 | 9 |
Pinus taeda | 568 | 0.97 | 30.89 | 530 (0.91) | 38 (6.85) | 539 | 29 |
Oryza sativa | 4347 | 3.57 | 23.44 | 3934 (3.23) | 413 (10.19) | 4199 | 148 |
Arabidopsis thaliana | 1890 | 0.84 | 26.52 | 1822 (0.81) | 68 (3.62) | 1837 | 53 |