Table 3 Comparison of DGE and RNA-Seq expression in soybean Clark standard and Clark glabrous of genes influencing trichome development in Arabidopsis
From: Transcript profiling reveals expression differences in wild-type and glabrous soybean lines
| Â | Â | DGE | RNASeq | ||||
|---|---|---|---|---|---|---|---|
Trichome genes | Soybean orthologs | CS | CG | CS/CG | CS | CG | CS/CG |
GL1 | Glyma07g05960 | 2.8 | 4.5 | 0.6 | 0.5 | 3.8 | 0.1 |
GL3 | Glyma08g01810 | 0.9 | 2.1 | 0.4 | 0.7 | 0.7 | 1.0 |
| Â | Glyma05g37770 | 0.4 | 1.3 | 0.3 | 1.0 | 0.8 | 1.3 |
| Â | Glyma07g07740 | 6.8 | 19 | 0.4 | 0.1 | 0.1 | 1.3 |
| Â | Glyma15g01960 | 7.2 | 9.1 | 0.8 | 1.7 | 4.7 | 0.4 |
TTG1 | Glyma06g14180 | 29 | 43 | 0.7 | 5.0 | 10.0 | 0.5 |
| Â | Glyma04g40610 | 8.5 | 16 | 0.5 | 2.7 | 5.2 | 0.5 |
| Â | Glyma16g04930 | 14 | 13 | 1.1 | 9.9 | 13.7 | 0.7 |
| Â | Glyma19g28250 | 15 | 14 | 1.1 | 15.0 | 15.8 | 1.0 |
GL2 | Glyma07g02220 | 7.2 | 9.1 | 0.8 | 2.6 | 5.9 | 0.4 |
| Â | Glyma07g08340 | 21 | 17 | 1.3 | 4.8 | 6.9 | 0.7 |
| Â | Glyma15g01960 | 7.2 | 9.1 | 0.8 | 1.7 | 4.7 | 0.4 |
| Â | Glyma08g21890 | 14 | 21 | 0.7 | 2.7 | 4.8 | 0.6 |
| Â | Glyma08g06190 | 11 | 4 | 2.7 | 0.1 | 0.2 | 0.5 |
SPL9 | Glyma03g29900 | 37 | 56 | 0.7 | 4.8 | 4.7 | 1.0 |
| Â | Glyma19g32800 | 0 | 0 | 0 | 8.7 | 9.0 | 1.0 |
TRY | Glyma06g45940 | 8.7 | 21 | 0.4 | 0.4 | 3.9 | 0.1 |
TCL1 | Glyma11g02060 | 0 | 0.6 | 0 | 0 | 0 | 0 |