Table 1 Top DGE tags and RNA-Seq RPKM for genes that are over expressed either in Clark standard (a) or Clark glabrous (b).
From: Transcript profiling reveals expression differences in wild-type and glabrous soybean lines
a) | Â | Â | Â | Â | DGE | Â | Â | RNASeq | Â |
|---|---|---|---|---|---|---|---|---|---|
| Â | DGE Tag ID | Glyma Model | Annotation | CS | CG | CS/CG | CS | CG | CS/CG |
| Â | DGE0000165 | Glyma14g04140.1 | copper ion binding protein | 595.96 | 0.21 | 2801 | 4.58 | 2.31 | 1.98 |
| Â | DGE0000012 | Glyma04g35130.1 | BURP domain protein | 2544.7 | 1.06 | 2392 | 480.38 | 0.01 | 45679.50 |
| Â | DGE0000974 | Glyma16g02940.1 | chitinase | 164.04 | 0.21 | 771 | 139.37 | 91.88 | 1.52 |
| Â | DGE0002509 | no Glyma model | cyclic nucleotide-gated channel B | 75.53 | 0.19 | 394.44 | NA | NA | NA |
| Â | DGE0003828 | no Glyma model | small polyprotein 2 | 51.49 | 0.19 | 268.89 | NA | NA | NA |
| Â | DGE0003923 | Glyma16g28030.1* | chlorophyll a-b binding protein 1 | 50.43 | 0.19 | 263.33 | 1093.27 | 280.90 | 3.89 |
| Â | DGE0001116 | Glyma08g22680.1 | Blue copper protein precursor | 146.17 | 1.06 | 137.4 | 4.39 | 0.44 | 10.02 |
| Â | DGE0002248 | Glyma11g07850.1 | cytochrome P450 monooxygenase CYP84A16 | 82.77 | 4.04 | 20.474 | 7.29 | 0.34 | 21.44 |
| Â | DGE0002191 | Glyma15g15660.1 | putative allergen | 84.26 | 4.26 | 19.8 | 5.55 | 1.38 | 4.03 |
b) | Â | Â | Â | Â | Â | Â | Â | Â | Â |
| Â | DGE0002073 | Glyma09g38410.1 | calreticulin-3 precursor | 88.94 | 329.79 | 0.2697 | 10.35 | 21.32 | 0.49 |
| Â | DGE0000639 | Glyma07g05620 | phosphatidylserine decarboxylase invertase/pectin methylesterase inhibitor family | 233.83 | 753.40 | 0.3104 | 3.07 | 65.57 | 0.05 |
| Â | DGE0004450 | Glyma06g47740.1 | protein | 44.89 | 143.62 | 0.31 | 8.04 | 28.56 | 0.28 |
| Â | DGE0000888 | Glyma05g09160.1 | lipid transfer protein | 177.87 | 567.45 | 0.31 | 7.03 | 12.47 | 0.56 |
| Â | DGE0003408 | Glyma02g01250.1 | hypothetical protein invertase/pectin methylesterase inhibitor family | 57.021 | 177.66 | 0.32 | 3.67 | 4.13 | 0.89 |
| Â | DGE0002491 | Glyma06g47740.1 | protein | 75.74 | 233.40 | 0.32 | 8.04 | 28.56 | 0.28 |
| Â | DGE0002716 | Glyma13g09420.1 | putative wall-associated kinase | 70.64 | 185.53 | 0.38 | 10.29 | 13.44 | 0.77 |
| Â | DGE0002161 | Glyma03g32820.1 | glycine-rich protein | 85.11 | 207.45 | 0.41 | 1.21 | 3.85 | 0.31 |
| Â | DGE0001547 | Glyma05g02630.1 | zinc ion binding protein | 114.47 | 264.89 | 0.43 | 8.19 | 12.54 | 0.65 |
| Â | DGE0002544 | Glyma01g07860.1 | copper amine oxidase | 74.47 | 167.23 | 0.45 | 37.11 | 251.18 | 0.15 |
| Â | DGE0002615 | Glyma06g17860.1 | putative diphosphonucleotide phosphatase | 72.98 | 158.72 | 0.46 | 33.91 | 224.33 | 0.15 |
| Â | DGE0003965 | Glyma02g37610.1 | Aspartic proteinase nepenthesin-1 precursor | 50 | 108.30 | 0.46 | 0.55 | 1.90 | 0.29 |
| Â | DGE0002836 | no Glyma model | root nodule extensin | 67.87 | 137.66 | 0.49 | NA | NA | NA |
| Â | DGE0004693 | Glyma10g35870.1 | auxin down-regulated protein | 42.55 | 85.74 | 0.50 | 40.61 | 209.40 | 0.19 |
| Â | DGE0001864 | Glyma12g36160.1 | receptor-like protein kinase | 97.45 | 196.17 | 0.50 | 23.48 | 27.61 | 0.85 |