SolRgene: an online database to explore disease resistance genes in tuber-bearing Solanumspecies

BMC Plant Biology

Table 1 Overview of the SolRgenecollection with respect to resistance data, populations, and sequences obtained by allele-mining per phylogenetic group.

SolRgene Collection ¹					LB resistance ²			Populations ³		Allele-mining ⁴
Subsection/Superseries	Series	Species	Accessions	Genotypes	vitro	leaf	field	total	Pi	Rpi-vnt1	Rpi-blb1	R2	Rx
Estolonifera	Etuberosa	3	19	68	61	13	14	0	0	0	0	0	7
	Juglandifolia	4	9	40	20	27	7	0	0	0	0	0	0
Potatoe Stellata	Moreliformia	1	4	14	12	3	2	1	0	0	0	0	0
	Bulbocastana	6	37	182	165	66	54	44	6	0	0	0	6
	Pinnatisecta	9	44	264	223	119	96	75	5	0	0	0	0
	Polyadenia	2	10	66	51	31	16	20	2	0	0	0	0
	Commersoniana	5	21	60	20	3	4	4	0	0	0	0	0
	Circaeifolia	4	16	74	61	15	13	14	4	0	0	0	0
	Lignicaulia	1	3	6	1	0	0	0	0	0	0	0	0
	Yungasensa	8	62	360	284	116	93	83	6	4	0	0	18
	Megistacroloba	9	54	245	169	42	27	25	6	1	0	0	0
Potatoe Rotata	Cuneoalata	1	7	28	20	5	5	4	0	0	0	0	0
	Conicibaccata	23	73	286	186	107	27	14	2	0	0	0	0
	Piurana	10	22	81	50	26	11	9	2	0	0	0	0
	Demissa	10	39	188	173	76	68	22	24	0	0	13	14
	Maglia	1	4	14	14	1	1	0	0	0	0	0	0
	Tuberosa	101	527	2450	1949	586	426	417	95	38	12	0	1
	Tuberosa cult	2	19	112	111	11	10	16	1	3	0	0	1
	Acaulia	5	29	102	92	25	20	19	3	0	0	0	0
	Longipedicellata	6	45	298	273	80	79	136	29	0	8	5	0
	Not classified	5	17	71	1	15	13	129	3	3	0	3	0
		216	1061	5009	3936	1367	986	1032	188	49	20	21	47

¹ number of genotypes, accessions, species, subgroups belonging to the phylogenetic groups as classified by Hawkes [2]
² number of genotypes with resistance data obtained in various assays
³ number of populations tested for segregation of resistance to late blight. Only the resistant parent was used to aggregate this classification
⁴ number of RGA sequences in various allele-mining studies

ISSN: 1471-2229