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Table 2 Primers used for expression analysis and mapping.

From: Epigenetic chromatin modifiers in barley: IV. The study of barley Polycomb group (PcG) genes during seed development and in response to external ABA

Gene

Primer

Sequence (5'-3')

Tm (°C)

Fragment (bp)

 

Expression

   

HvFIE

HvFIE F1

GTGCCCGATTGTGACATTTGGTTT

70

264

 

HvFIE R1

CACGGCGGTTTTTGCTTCCTTC

68

 

HvE(Z)

HvE(Z) F1

AAGCATCTGGTTCTCATCGTC

62

293

 

HvE(Z) R1

TGGTCCACCTCAACAAGTAGA

62

 

HvSu(z)12a

HvSu(z)12a F1

TCGTGACTCGGTAGGAAACATTG

68

261

 

HvSu(z)12a R1

CCAATGTTAATAGGTGTTTCAAG

62

 

HvSu(z)12b

HvSu(z)12b F1

GTATATGAGTTGAGCATAGTGC

62

278

 

HvSu(z)12b R1

TTCAGATGGATTTCATTACAGC

60

 

HvSu(z)12c

HvSu(z)12c F

ATGTGCCGTCAACCGTCCACG

68

463

 

HvSu(z)12c R

CTCCAGCTTGCCCTTGTGAAG

66

 

HvActin

Barley Actin F

ATGGCTGACGGTGAGGACATCCAGCC

72

1111

 

Barley Actin R

TCAGAAGCACTTCCTGTGGACGATCGC

71

 
 

HvActin F

GCCGTGCTTTCCCTCTATG

60

235

 

HvActin R

GCTTCTCCTTGATGTCCCTTA

62

 

HVA22

HVA22 F

TGGCGCTCCCGCAGTTCAAG

64

123

 

HVA22R

CCTTGAGTATGTGCACCTTGTG

62

 
 

Mapping

   

HvFIE

HvFIE F2

GTGGGAGCCAAAAACAAAAG

60

262

 

HvFIE R2

GGCGTCACAGGCTAAGTAAGG

61

 

HvE(Z)

HvE(Z) F2

AAATCAGATGTTGCAGGATGG

60

550

 

HvE(Z) R2

GCTCCCTTGCATAGATACCAAC

61

 

HvSu(z)12a

HvSu(z)12a F2

ACTCGTGCAGAACCCAAGAC

60

576

 

HvSu(z)12a R2

ACCCATCCCAGCTACAACAG

60

 

HvSu(z)12b

HvSu(z)12b F2

ATATTCCTTGGGCCTGTGAG

59

308

 

HvSu(z)12b R2

TGGAACAGAACACGACGAAG

54

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