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Table 4 Genes called up in 2xX4x and 2xX6x, not up in 4xX2x and 6xX2x.

From: Transcriptional profiles underlying parent-of-origin effects in seeds of Arabidopsis thaliana

AtId symbol annotation GO biological process (function)
At1g03445 BSU1 serine/threonine phosphatase brassinosteroid mediated signalling
At1g13680   phospholipase C, similar to MAP3K-like protein kinase intracellular signalling cascade
At1g17770 SUVH7 SU(VAR)3-9 homolog, a SET domain protein chromatin modification
At1g22090 EMB2204 unknown protein embryonic development
At1g44090 ATGA20OX5 gibberellin 20-oxidase (isopenicillin-N synthase activity)
At1g48010   invertase/pectin methylesterase inhibitor family protein (pectinesterase inhibitor activity)
   small, secreted, cysteine rich protein with sequence similarity to  
At1g60985 SCRL6 SCR (S locus cysteine-rich protein) signal transduction
At1g65300 PHE2/AGL38 MADS-box family transcription factor regulation of transcription
At1g65330 PHE1/AGL37 MADS-box family transcription factor regulation of transcription/embryonic development
   bifunctional cytosolic hydroxymethyldihydropterin  
At1g69190   pyrophosphokinase/dihydropteroate synthase (HPPK/DHPS) response to oxidative stress
At1g71770 PAB5 polyadenylate-binding protein translational initiation
   protease inhibitor/seed storage/lipid transfer protein (LTP)  
At1g73560   family protein lipid transport
At1g73610   GDSL-motif lipase/hydrolase family protein lipid metabolic process
At1g77510 ATPDIL1-2 protein disulfide isomerase cell redox homeostasis
At2g02000 GAD3 glutamate decarboxylase, calmodulin binding carboxylic acid metabolic process
At2g02010 GAD4 glutamate decarboxylase, calmodulin binding carboxylic acid metabolic process
At2g02490   unknown protein unknown
At2g02515   unknown protein unknown
At2g15740   zinc finger (C2H2 type) family protein regulation of transcription
At2g18490   zinc finger (C2H2 type) family protein regulation of transcription
At2g23170 GH3.3 IAA-amido synthase response to auxin stimulus/auxin homeostasis
At2g25330   meprin and TRAF homology domain-containing protein unknown
At2g25700 ASK3 E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 (At3) (ubiquitin-protein ligase activity)
At2g26050   zinc ion binding unknown
At2g30810   gibberellin-regulated family protein response to gibberellin stimulus
At2g36560   DNA-binding protein-related unknown
At2g39640   glycosyl hydrolase family 17 protein carbohydrate metabolic processes
At2g43670   glycosyl hydrolase family 17 protein unknown
At2g45110 ATEXPB4 beta-expansin cellulose and pectin-containing cell wall loosening
At3g02670   proline-rich family protein phosphate transport
At3g05460   sporozoite surface protein-related unknown
At3g05860 AGL45 MADS-box family transcription factor regulation of transcription
At3g10780   emp24/gp25L/p24 family protein intracellular protein transport
    cell redox homeostasis/intracellular signalling
At3g11920   glutaredoxin-related cascade
At3g17150   pectinesterase inhibitor (pectinesterase inhibitor activity)
At3g21410 FBW1 F-box family protein ubiquitin-dependent protein catabolic process
At3g24510 GIG2 defensin-like (DEFL) family protein unknown
At3g49770   unknown protein unknown
At3g57160   unknown protein unknown
At3g57270 BG1 glycosyl hydrolase family 17 protein, beta-1,3-glucanase carbohydrate metabolic process
At4g16500   cysteine protease inhibitor family protein (enzyme regulator activity)
At4g25530 FWA homeodomain protein regulation of transcription
   small, secreted, cysteine rich protein with sequence similarity to  
At4g29285 LCR24 the PCP (pollen coat protein) gene family unknown
   chromatin remodeling factor, strong similarity to CHD3 chromatin assembly or disassembly/regulation of
At4g31900   (PICKLE) transcription
At4g32105   galactosyltransferase protein amino acid glycosylation
At4g35725   unknown protein unknown
At4g36590 AGL40 MADS-box transcription factor regulation of transcription
At4g37360 CYP81D2 cytochrome P450 family protein electron transport
At4g39650 GGT2 gamma-glutamyltranspeptidase glutathione catabolic process
At5g05260 CYP79A2 cytochrome P450 glucosinolate biosynthesitic process
   protease inhibitor/seed storage/lipid transfer protein (LTP)  
At5g09370   family protein lipid transport
At5g09730 BXL3 glycosyl hydrolase family 3 protein, beta-xylosidase carbohydrate metabolic process
At5g10440 CYCD4;2 cyclin family protein regulation of progression through cell cycle
At5g12070   self-incompatibility protein-related unknown
At5g14960 E2L1/DEL2 transcription factor/E2F-like repressor regulation of progression through cell cycle
At5g20710 BGAL7 beta-galactosidase lactose catabolic process
At5g34883   unknown protein unknown
At5g34885   unknown protein unknown
At5g40040 RPP2E 60S acidic ribosomal protein P2 translational elongation
At5g46950   invertase/pectin methylesterase inhibitor family protein (pectinesterase inhibitor activity)
At5g50480   CCAAT-box binding transcription factor Hap5a regulation of transcription
At5g54220   defensin-like (DEFL) family protein Unknown
  1. *bold AtId = also down in 4 × 2, 6 × 2 (SLR/pSLR ≤-0.6)
  2. Up = (SLR/pSLR ≥ 0.6), not up = (SLR/pSLR (≤ 0.3).
  3. GO annotations were obtained from TAIR (http://www.arabidopsis.org/tools/bulk/go/index.jsp; Berardini et al., 2004). GO function terms are provided where no biological process terms were annotated.