Gene abbreviation | Acession | A. thaliana ortholog locus | A. thaliana annotation | Similarity (e-value) | Identity (%) | Gene Size ** | Blast alignment | Primer sequence |
---|---|---|---|---|---|---|---|---|
GhACT4 | AY305726 | At5g09810 | Actin gene family | 6.90E-194 | 86% | 1700 | 1013 | TTGCAGACCGTATGAGCAAG/ATCCTCCGATCCAGACACTG |
GhEF1α 5 | DQ174254 | At5g60390 | Elongation Factor 1-alpha | 5.30E-225 | 85% | 1764 | 1193 | TCCCCATCTCTGGTTTTGAG/CTTGGGCTCATTGATCTGGT |
*GhFBX6 | DR463903 | At5g15710 | F-box family protein | 2.30E-93 | 79% | 1884 | 567 | TGCCTGCAGTAAATCTGTGC/GGGTGAAAGGGTTTCCAAAT |
*GhPP2A1 | DT545658 | At1g59830 | Catalytic subunit of protein phosphatase 2A | 3.30E-110 | 77% | 1301 | 675 | GATCCTTGTGGAGGAGTGGA/GCGAAACAGTTCGACGAGAT |
*GhMZA | DT571956 | At5g46630 | Clathrin adaptor complexes medium subunit family protein | 1.40E-131 | 82% | 1853 | 755 | CCGTCAGACAGATTGGAGGT/AAAGCAACAGCCTCAACGAC |
*GhPTB | DT574577 | At3g01150 | Polypyrimidine tract-binding protein homolog | 1.50E-120 | 77% | 1511 | 752 | GGTTACCATTGAGGGTGTGG/GTGCACAAAACCAAATGCAG |
*GhGAPC2 | ES810306 | At1g13440 | Glyceraldehyde-3-phosphate dehydrogenase C-2 | 0.0 | 83% | 1439 | 858 | TCCCCATCTCTGGTTTTGAG/AACCCCATTCGTTGTCCATA |
GhβTUB3 | AY345606 | At5g12250 | Beta-tubulin | 5.70E-198 | 80% | 1696 | 1135 | GATTCCCTTCCCTCGTCTTC/CGGTTAGAGCTCGGTACTGC |
***GhUBQ14 | DW505546 | At4g02890 | Polyubiquitin | 0.0 | 80% | 1502 | 510 | CAACGCTCCATCTTGTCCTT/TGATCGTCTTTCCCGTAAGC |
GhMADS3 | ES812912 | At4G18960 | AGAMOUS | NA | NA | NA | NA | ATCAAGCGGATCGAAAACAC/CAACCTCAGCGTCACAAAGA |
GhSEP-like1 | ES827315 | At1G24260 | SEPALLATA3 | NA | NA | NA | NA | TCCGTTCTTTGTGATGCAGA/CCATGGCTGCACTTCTGGTA |