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Table 8 InvCD141 haplotype models obtained with Satlotyper.

From: Natural diversity of potato (Solanum tuberosum) invertases

Haplotype

cDNA allele or group 1

Haplotype frequency

SNP 280 (Sa) 2

SNP 426 (Sa, Td3)

SNP 440 (d)

SNP 543 (Sa)

SNP 673 (Se)

SNP 765 (e)

SNP 862 (P18e, Se)

SNP 889 (d)

SNP 1029 (Sb)

SNP 1030 (Sa)

A

d

0.169

G

T

G

C

A

A

A

C

T

G

B

P54e1, P54e2

0.101

G

T

C

C

A

G*

A

A

T

G

C

 

0.086

G

T

C

C

G

A

G

A

T

G

D

 

0.073

G

T

C

C

G

G*

G

A

G

G

E

Sa

0.064

A*

C

C

T*

A

A

A

A

T

C

F

 

0.060

G

T

G

C

A

G*

A

A

T

G

G

P18c

0.060

G

T

C

C

A

A

A

A

T

G

H

 

0.058

G

T

C

C

G

A

G

A

G

G

I

 

0.058

G

T

C

C

A

G*

A

C

T

G

K

 

0.048

G

T

C

C

A

A

G

A

T

G

L

 

0.047

G

C

C

C

A

A

A

C

T

G

M

 

0.047

G

C

C

C

G

G*

A

A

G

G

N

 

0.038

G

T

G

C

G

G*

G

A

G

G

O

 

0.027

G

T

G

T*

A

A

A

A

T

C

P

 

0.027

A*

T

C

T*

A

A

A

A

T

C

Q

 

0.019

G

T

C

C

G

A

A

A

T

G

R

 

0.017

A*

T

C

T*

G

G*

G

A

T

C

S

 

0.016

A*

C

G

C

A

A

A

C

T

G

  1. 1 cDNA allele or allele group that corresponds to the haplotype.
  2. 2 cDNA allele or allele group, for which the SNP is diagnostic (see Table S5 in additional file 3).
  3. Associated SNP alleles are highlighted by *.
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BMC Plant Biology

ISSN: 1471-2229

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