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Table 3 Significantly associated polymorphic sites of COMT with DNDF, identified by GLM, based on alignments resulting from four different parameters settings of CLUSTAL W

From: Polymorphisms in O-methyltransferase genes are associated with stover cell wall digestibility in European maize (Zea maysL.)

Site

Alignments

 

1 (2461 bp)

2 (2517 bp)

3 (2508 bp)

4 (2553 bp)

701

X

X

X

X

737

X

X

X

X

781

  

X

 

782

X

X

 

X

787

X

 

X

X

793

   

X

824

 

X

X

X

845

X

  

X

855

X

  

X

897

 

X

  

962

X

X

X

X

1010

X

X

X

X

1059

X

X

X

X

1240

X

X

X

X

1351

X

   

1352

X

   

1354

X

   

1356

 

X

  

1388

X

   

1417

  

X

 

1419

  

X

 

1432

  

X

 

1562

 

X

  

1612

X

X

X

X

1619

X

X

X

X

  1. Site numbers denote bp alignment positions of individual SNPs and starting positions of Indels based on reference sequence AY323283 of Genbank.
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BMC Plant Biology

ISSN: 1471-2229

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