Dry seed and aerobic germination (up to 24 h) cv. Amaroo
|
E-MEXP-1766
|
3
|
15
|
Dry and germinating seed
|
[83]
|
Dry seed and anaerobic germination (up to 24 h) and switch conditions cv. Amaroo
|
E-MEXP-2267
|
3
|
36
|
Imbibed seed
|
[84]
|
Aerobic and anaerobic grown coleoptiles cv. Nipponbare
|
GSE6908
|
2
|
4
|
Coleoptile
|
[85]
|
Embryo, endosperm, leaf and root from 7-d seedling, 10 d seedling cv. Zhonghua
|
GSE11966
|
2
|
10
|
Embryo, endosperm, leaf and root from 7-d seedling, 10-d seedling
|
[86]
|
Stigma, Ovary cv. Nipponbare
|
GSE7951
|
3
|
6
|
Stigma, ovary
|
[87]
|
Mature leaf, young leaf, semi apical meristem, inflorescence, seed cv. IR64
|
GSE6893
|
3
|
45
|
Mature leaf, young leaf, semi apical meristem, inflorescence, seed
|
[39]
|
Abiotic stress - Rice
| | | | | |
Drought, salt, cold stress cv. IR64
|
GSE6901
|
3
|
12
|
Seedling
|
[39]
|
Heat stress cv. Zhonghua
|
GSE14275
|
3
|
6
|
Seedling
|
[71]
|
Salt stress on 2 cultivars; indica, FL478 (salt tolerant), indica, IR29 (salt sensitive)
|
GSE3053
|
3
|
11
|
Crown and growing point
|
[88]
|
Salt stress on 4 cultivars; japonica, m103 (salt sensitive), indica, IR29 (salt sensitive), japonica, Agami (salt tolerant), indica, IR63731 (salt tolerant)
|
GSE4438
|
3
|
24
|
Panicle initiation stage
|
[89]
|
Salt stress on root using 4 cultivars; FL478 (salt tolerant), IR29 (salt sensitive), IR63731 (salt tolerant), Pokkali (salt tolerant)
|
GSE14403
|
3
|
23
|
Root
|
-
|
Fe and P treatments cv. Nipponbare
|
GSE17245
|
2
|
16
|
Root
|
[90]
|
Arsenate treatment cv. Azucena
|
GSE4471
|
3
|
12
|
Seedling
|
[91]
|
Physical stress at roots tips cv. Bala
|
GSE10857
|
3
|
12
|
Root tip
|
[92]
|
Biotic stress - Rice
| | | | | |
S. Hermonthica plant parasite infection cv. Nipponbare (resistant), IAC165 (susceptible)
|
GSE10373
|
2
|
24
|
Root
|
[93]
|
M. grisea blast fungus infection cv. Nipponbare
|
GSE7256
|
2
|
8
|
Leaf
|
[94]
|
Rice stripe virus infection cv. WuYun3, KT95-418
|
GSE11025
|
3
|
12
|
Seedling
|
-
|
Infection with bacteria X. Oryzae pv. oryzicola and oryzae cv. Nipponbare
|
GSE16793
|
4
|
60
|
Whole-plant tissue
|
-
|
Hormone treatment - Rice
| | | | | |
Cytokinin treatment on root and leaf cv. Nipponbare
|
GSE6719
|
3
|
24
|
Root, 2-week old seedlings
|
[95]
|
Indole-3-actetic acid and benzyl aminopurine treatment cv. IR64
|
GSE5167
|
2
|
6
|
Seedling
|
[96]
|
Development - Arabidopsis
| | | | | |
AtGenExpress developmental tissue microarray dataset (wildtype only)
|
E-AFMX-9
|
3
|
147
|
Wild type, different tissues
|
[97]
|
Abiotic stress - Arabidopsis
| | | | | |
AtGenExpress global stress expression dataset (wildtype)
|
GSE5620, GSE5624, GSE5623, GSE5621, GSE5628
|
2
|
30
|
Wild type, shoots
|
[80]
|