From: QTLs and candidate genes for desiccation and abscisic acid content in maize kernels
Number | QTL name | Chr.bin | Position | ProxMarker | DistMarker | Confidence interv.+/- LOD = 1 | LOD value | R2 | Additive value/F252 |
---|---|---|---|---|---|---|---|---|---|
1 | FW_30_1 | 4.03 | 88 | nc004 | umc2039 | 76-104 | 2.54* | 7.5 | -13.203 |
2 | FW_40_1 | 5.05 | 396 | umc1822 | umc54 | 372-424 | 2.04 | 6.1 | 15.444 |
3 | FW_60_1 | 1.05 | 356 | bnlg2295 | umc1124 | 332-380 | 2.14 | 6.5 | -15.819 |
4 | FW_60_2 | 4.04 | 144 | gsy4 | mmc0471 | 140-160 | 2.02 | 6.1 | -11.272 |
5 | FW_60_3 | 8.09 | 504 | Umc2052 | umc1384 | 488-504 | 2.26 | 6.9 | 14.543 |
 | cumulated |  |  |  |  |  |  | 19.5 |  |
6 | FW_80_1 | 1.04 | 336 | Bnlg1811 | dupssr26 | 308-364 | 2.58* | 7.5 | -16.785 |
7 | FW_80_2 | 1.08 | 584 | Umc83C | mmc0041 | 576-592 | 3.36*** | 9.7 | -18.124 |
8 | FW_80_3 | 2.02 | 80 | mmc0111 | gsy53b | 48-92 | 2.17 | 6.4 | 15.758 |
9 | FW_80_4 | 4.04 | 156 | mmc0471 | umc1088 | 144-188 | 2.29 | 6.7 | -13.621 |
10 | FW_80_5 | 8.09 | 496 | Umc2052 | umc1384 | 484-504 | 2.73* | 8.1 | 21.382 |
 | cumulated |  |  |  |  |  |  | 38.4 |  |
11 | DW_30_1 | 2.08 | 484 | Umc1536 | umc1049 | 468-496 | 2.2 | 6.5 | -2.717 |
12 | DW_30_2 | 5.01 | 60 | mmc0151 | umc147a | 44-76 | 2.36 | 7 | 2.939 |
13 | DW_30_3 | 9.07 | 480 | gsy330 | bnlg1129 | 460-492 | 4.09**** | 11.8 | 4.186 |
 | cumulated |  |  |  |  |  |  | 25.3 |  |
14 | DW_40_1 | 5.05 | 392 | Umc1822 | umc54 | 372-420 | 2.1 | 6.3 | 5.466 |
15 | DW_60_1 | 1.04 | 340 | dupssr26 | bnlg2295 | 332-364 | 4.52**** | 13.1 | -9.324 |
16 | DW_60_2 | 2.08 | 536 | dupssr24 | umc1464 | 512-548 | 2.97** | 8.8 | -6.879 |
17 | DW_60_3 | 5.04 | 344 | gsy34 | umc1221 | 324-364 | 2.14 | 6.4 | -7.937 |
18 | DW_60_4 | 5.07 | 536 | Umc1537 | umc68 | 508-552 | 2.34 | 7 | 7.869 |
19 | DW_60_5 | 5.07 | 580 | Umc68 | bnlg118 | 568-592 | 3.33*** | 9.9 | -7.540 |
20 | DW_60_6 | 8.09 | 500 | Umc2052 | umc1384 | 484-504 | 2.5* | 7.6 | 8.503 |
 | cumulated |  |  |  |  |  |  | 52.8 |  |
21 | DW_80_1 | 1.01 | 0 | Bnlg1124 | umc1354 | 0-20 | 2.08 | 6.2 | 7.824 |
22 | DW_80_2 | 1.04 | 336 | Bnlg1811 | dupssr26 | 328-356 | 3.6*** | 10.3 | -11.965 |
23 | DW_80_3 | 1.08 | 584 | Umc83C | mmc0041 | 572-596 | 2.03 | 6 | -8.734 |
24 | DW_80_4 | 5.04 | 324 | Umc1110 | bnl7_71 | 284-344 | 2.41 | 7 | -9.851 |
25 | DW_80_5 | 8.09 | 504 | Umc2052 | umc1384 | 488-504 | 2.46* | 7.3 | 10.686 |
 | cumulated |  |  |  |  |  |  | 36.8 |  |
26 | %DW_30_1 | 4.04 | 136 | phi096 | gsy4 | 132-148 | 2.23 | 6.6 | 1.025 |
27 | %DW_30_2 | 4.06 | 264 | Bnlg1621 | umc1329 | 236-292 | 2.01 | 6 | -1.134 |
28 | %DW_30_3 | 5.01 | 12 | Bnlg1006 | mmc0151 | 0-32 | 2.47* | 7.3 | -1.175 |
 | cumulated |  |  |  |  |  |  | 19.9 |  |
29 | %DW_60_1 | 1.01 | 32 | Umc1354 | bnlg1014 | 0-64 | 2 | 6 | 1.318 |
30 | %DW_60_2 | 1.06 | 440 | Umc1590 | umc1335 | 420-484 | 2.13 | 6.4 | 1.197 |
31 | %DW_60_3 | 3.02 | 52 | Umc1892 | bnlg1325 | 40-72 | 4.65**** | 13.5 | 1.750 |
32 | %DW_60_4 | 5.02 | 128 | Umc90 | csu108 | 104-152 | 2.61* | 7.8 | 1.573 |
33 | %DW_60_5 | 6.05 | 308 | Umc1020 | bnlg1702 | 296-332 | 2.33 | 7 | -0.944 |
 | cumulated |  |  |  |  |  |  | 40.7 |  |
34 | %DW_80_1 | 4.05 | 180 | Bnlg1217 | umc1511 | 172-208 | 2.24 | 6.6 | 1.051 |
35 | %DW_80_2 | 5.01 | 52 | mmc0151 | umc147a | 32-72 | 2.62* | 7.6 | 1.294 |
36 | %DW_80_3 | 5.07 | 528 | Umc1537 | umc68 | 508-544 | 2.35 | 6.9 | -0.991 |
37 | %DW_80_4 | 8.01 | 48 | Bnlg1194 | bnl9_11 | 32-76 | 2.85* | 8.3 | -1.221 |
38 | %DW_80_5 | 9.04 | 220 | csu147 | umc38c | 196-244 | 3.04** | 8.8 | 1.625 |
39 | %DW_80_6 | 9.07 | 464 | Umc1137 | gsy330 | 440-488 | 4.38**** | 12.4 | 1.438 |
 | cumulated |  |  |  |  |  |  | 50.6 |  |
40 | Water_30_1 | 4.03 | 116 | Umc2039 | phi096 | 76-144 | 2.25 | 6.7 | -10.951 |
41 | Water_30_2 | 7.03 | 216 | Bnlg339 | bnlg155 | 196-228 | 2.24 | 6.6 | -9.338 |
 | cumulated |  |  |  |  |  |  | 13.3 |  |
42 | Water_60_1 | 1.06 | 432 | Umc1590 | umc1335 | 404-448 | 2.83* | 8.4 | -8.631 |
43 | Water_60_2 | 3.02 | 40 | Umc1892 | bnlg1325 | 12-52 | 3.01** | 9 | -9.340 |
44 | Water_60_3 | 4.04 | 148 | mmc0471 | umc1088 | 116-156 | 3.29*** | 9.7 | -8.285 |
45 | Water_60_4 | 6.05 | 308 | Umc1020 | bnlg1702 | 296-364 | 2.47* | 7.4 | 6.476 |
46 | Water_60_5 | 7.02 | 80 | Umc1549 | bnlg1792 | 68-100 | 2.04 | 6.2 | -5.933 |
 | cumulated |  |  |  |  |  |  | 40.7 |  |
47 | Water_80_1 | 1.08 | 584 | Umc83C | mmc0041 | 572-592 | 3.89*** | 11.1 | -8.425 |
48 | Water_80_2 | 2.06 | 372 | Bnlg1138 | umc1079 | 348-380 | 2.37* | 6.9 | 6.296 |
49 | Water_80_3 | 4.04 | 160 | phi079 | bnlg1937 | 144-172 | 3.71*** | 10.6 | -7.492 |
50 | Water_80_4 | 4.04 | 176 | Bnlg1217 | umc1511 | 172-188 | 3.42*** | 9.9 | -7.515 |
51 | Water_80_5 | 8.01 | 44 | Bnlg1194 | bnl9_11 | 28-64 | 2.29 | 6.7 | 7.106 |
 | cumulated |  |  |  |  |  |  | 45.2 |  |
52 | ABA_embryo_30_1 | 2.04 | 280 | Bnlg1175 | Â | 264-301 | 2.31 | 7.1 | 66.365 |
53 | ABA_embryo_30_2 | 2.08 | 604 | Bnlg1940 | Â | 84-620 | 2.75* | 8.4 | 63.745 |
54 | ABA_embryo_30_3 | 7.05 | 364 | csu17 | Â | 48-388 | 2.06 | 6.4 | -52.461 |
 | cumulated |  |  |  |  |  |  | 21.9 |  |
55 | ABA_embryo_40_1 | 1.11 | 820 | Bnlg131 | bnl6_32 | 804-836 | 2.32 | 7 | 33.212 |
56 | ABA_embryo_40_2 | 2.04 | 288 | Bnlg1175 | umc1007 | 272-304 | 3.27*** | 9.6 | 50.724 |
57 | ABA_embryo_40_3 | 5.07 | 528 | Umc1537 | umc68 | 504-544 | 2.53* | 7.5 | -35.741 |
 | cumulated |  |  |  |  |  |  | 24.1 |  |
58 | ABA_embryo_60_1 | 9.04 | 236 | csu147 | umc38c | 212-264 | 2.01 | 6.1 | -66.055 |
59 | ABA_embryo_80_1 | 5.02 | 120 | Umc90 | csu108 | 96-144 | 2.31 | 6.7 | -71.183 |
60 | ABA_embryo_80_2 | 7.03 | 224 | Bnlg339 | bnlg155 | 216-232 | 4.07**** | 11.5 | -70.534 |
61 | ABA_embryo_80_3 | 9.07 | 476 | gsy330 | bnlg1129 | 464-492 | 2.9** | 8.4 | -58.211 |
 | cumulated |  |  |  |  |  |  | 26.6 |  |
62 | ABA_endosperm_30_1 | 3.07 | 356 | Bnlg197 | Â | 344-388 | 2.53* | 7.5 | -8.566 |
63 | ABA_endosperm_30_2 | 7.02 | 136 | Umc5b | Â | 124-148 | 2.91** | 8.6 | -10.838 |
64 | ABA_endosperm_30_3 | 9.07 | 476 | gsy330 | Â | 460-492 | 3.93*** | 11.4 | -10.131 |
 | cumulated |  |  |  |  |  |  | 27.5 |  |
65 | ABA_endosperm_40_1 | 2.04 | 296 | Bnlg1175 | umc1007 | 284-312 | 3.34*** | 9.8 | 5.957 |
66 | ABA_endosperm_40_2 | 5.03 | 256 | Umc43 | umc1056 | 244-264 | 2.58* | 7.7 | -4.642 |
67 | ABA_endosperm_40_3 | 10.04 | 216 | gsy87 | bnlg1074 | 200-236 | 2.71* | 8 | 4.586 |
 | cumulated |  |  |  |  |  |  | 25.5 |  |
68 | ABA_endosperm_60_1 | 3.03 | 64 | Bnlg1325 | bnlg1523 | 40-100 | 2.24 | 6.7 | 4.502 |
69 | ABA_endosperm_60_2 | 4.10 | 556 | Umc2011 | bnlg1337 | 540-572 | 2.02 | 6.1 | -4.458 |
 | cumulated |  |  |  |  |  |  | 12.8 |  |
70 | ABA_endosperm_80_1 | 7.03 | 244 | csu37a | bnlg1666 | 236-288 | 2.02 | 6 | 1.232 |
71 | ABA_endosperm_80_2 | 9.07 | 452 | dupssr29 | umc1137 | 432-468 | 2.23 | 6.5 | -1.202 |
 | cumulated |  |  |  |  |  |  | 12.5 |  |
72 | Slope_1 | 2.04 | 316 | csu143 | bnlg371 | 306-336 | 2.92** | 8.5 | 0.002 |
73 | Slope_2 | 2.06 | 376 | Bnlg1138 | umc1079 | 364-40 | 2.61* | 7.6 | 0.002 |
74 | Slope_3 | 3.04 | 220 | csu30B | dupssr23 | 212-244 | 2.07 | 6.1 | -0.002 |
75 | Slope_4 | 4.03 | 80 | nc004 | umc2039 | 48-92 | 2.31 | 6.8 | -0.002 |
 | cumulated |  |  |  |  |  |  | 29 |  |
76 | Rate_30_40_1 | 2.06 | 404 | Umc1079 | umc139L | 388-424 | 2.54* | 7.6 | 0.013 |
77 | Rate_30_40_2 | 7.05 | 364 | csu17 | bnl16_06 | 352-380 | 3.22*** | 9.6 | 0.017 |
 | cumulated |  |  |  |  |  |  | 17.2 |  |
78 | Rate_40_60_1 | 3.03 | 64 | Bnlg1325 | bnlg1523 | 48-72 | 3.51*** | 10.5 | 0.008 |