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Table 2 De novo insertion sites of Dart-related TEs identified by transposons-display (TD) (designated as Dart-TDI) in the rice-Zizania introgressants

From: Transpositional reactivation of the Dart transposon family in rice lines derived from introgressive hybridization with Zizania latifolia

Insertion sites Position of insertion sites Locus-specific primers (5'-3') Inserted into TIR (5'-3') TSD (5'-3')
Dart-TDI-1 Chr.3; position: 2726981;
non-coding 		For: tcacgcagtagatgccaaag
Rev: gcacgtctccgtagctctct 		RZ2 gcccatttggccacctcta tgctagta
Dart-TDI-3 Chr.10; position:4241777;
OSJNAb0015J03.2 exon 		For: gtagagggctcaatcgtgga
Rev: ctaaggtctcgaggcacacc 		RZ1,
RZ2 		gcccatttggccacctcta gcatgaag
Dart-TDI-4 Chr.5; position: 29238540;
non-coding 		For: gcccgtttggccacctctat
Rev: tgtaaaatgaccagcgacga 		RZ1,
RZ2, RZ35 		gcccatttggccacctcta tgtggttg
Dart-TDI-5 Chr.5; position:14917879;
non-coding 		For: tacggttcccattgttttcc
Rev: gggtgtgcacgatgttgtaa 		RZ2 gcccatttggccacctcta tacaatgt
Dart-TDI-7 Chr.12; position:12726861;
non-coding 		For: ttgttgttagttttgcgtgtaga
Rev: gaaagcaggttggagaggtta 		RZ1,
RZ2 		gcccatttggccacctcta cgctagta
Dart-TDI-8 Chr.3; position:27833204;
Os03g0699200 exon 		For: taattaagttggaagtgggaca
Rev: tttctgtaagattacaaccagaggt 		RZ1,
RZ2, RZ35 		gcccatttggccacctcta tggagtat
Dart-TDI-10 Chr.3; position:17730615;
non-coding 		For: ctttcgtaggcgaaaagtgc
Rev: ctgcaaccacctgtctctga 		RZ2 gcccatttggccacctcta cgaagaac
Dart-TDI-11 Chr.4; position:638561;
non-coding 		For: catgaattgggtgccatgta
Rev: ccccatagggtaggcaaaat 		RZ1,
RZ2, RZ35 		gcccatttggccacctcta tctgaatt
Dart-TDI-16 Chr.5; position:10010289;
non-coding 		For: gcccgtttggccacctctat
Rev: ggtggaggacctgctcaata 		RZ1,
RZ2 		gcccatttggccacctcta ttcgacat
Dart-TDI-18 Chr.12; position:6156546;
non-coding 		For: tgagcacgcctagctcagta
Rev: atgcacggcaactttctctt 		RZ1,
RZ2 		gcccatttggccacctcta cctctcaa
Dart-TDI-19 Chr.12; position:6345593;
non-coding 		For: gcccgtttggccacctctac
Rev: acaaatggcctcctgtgttc 		RZ1 gcccatttggccacctcta caagcagc
Dart-TDI-20 Chr.12; position:21951729;
non-coding 		For: tccagccaaaccctgttc
Rev: gctcgccagatgtcaggt 		RZ1 gcccatttggccacctcta cgtcggga
Dart-TDI-21 Chr.1; position:19308190;
non-coding 		For: tgctacagtagaagggcgtgta
Rev: atgcacatctggtcttttgatg 		RZ2 gcccatttggccacctcta cacacgta
Dart-TDI-22 Chr.2; position:6211564;
non-coding 		For: ggatccgtttggatcagaga
Rev: tgcagcagctgattcatacc 		RZ2 gcccatttggccacctcta ccaatatt
Dart-TDI-24 Chr.5; position:10749306;
OSJNBa0037H03.12 intro 		For: gagctgctcctgaaaaccac
Rev: gaattttccttgccgtgtgt 		RZ1,
RZ2 		gcccatttggccacctcta tcatgttt
Dart-TDI-25 Chr.1; position:25299;
non-coding 		For: gtgccggagaatgatttgat
Rev: atttccctcgatgcactgtc 		RZ1,
RZ2 		gcccatttggccacctcta tacgcagc
Dart-TDI-26 Chr.2; position:10207338;
Os02g0277600 intro 		For: gcccatttggccacctcta
Rev: cgaatgagtgtccttgatcg 		RZ1,
RZ2 		gcccatttggccacctcta agcaaaac
Dart-TDI-27 Chr.12; position:23594158;
Os12g0572000 3'UTR 		For: gcccgtttggccacctctac
Rev: agcaacccacagaacagctt 		RZ35 gcccatttggccacctcta ccaccctc
Dart-TDI-28 Chr.8; position:23713525;
non-coding 		For: gcccgtttggccacctctac
Rev: tctgcggttgaaacaatgag 		RZ2 gcccatttggccacctcta cggctaac
Dart-TDI-29 Chr.7; position:20028374;
non-coding 		For: gcccgtttggccacctctat
Rev: aaagtcaatggaaaggggaaa 		RZ1,
RZ2 		gcccatttggccacctcta tcaaaatc
Dart-TDI-30 Chr.4; position:25704503;
Os04g0514800 exon 		For: gcccatttggccacctcta
Rev: ggcaatgcggttggtttc 		RZ1,
RZ2 		gcccatttggccacctcta cgctattc
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