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Table 2 Genes structure and tissue specific gene expression

From: RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

  first exon %GC internal exons %GC last exon %GC # of exons total exon length # of genes
aerial 344.5 ± 392.0 45.9% ± 7.2% 187.5 ± 170.7 43.4% ± 3.7% 267.6 ± 285.9 45.7% ± 7.1% 6.5 ± 5.5 1297.9 ± 882.6 6425.0
seed 353.6 ± 422.4 45.4% ± 7.5% 190.7 ± 178.4 44.0% ± 4.3% 268.4 ± 326.9 45.1% ± 7.5% 4.9 ± 4.7 1097.2 ± 878.7 2036.0
underground 403.4 ± 391.1 46.4% ± 7.4% 204.7 ± 134.9 43.8% ± 4.6% 305.4 ± 309.6 45.9% ± 7.5% 5.1 ± 9.9 1218.9 ± 1954.3 6939.0
  1. aerial - The subset of genes with preferential gene expression in aerial tissues.
  2. seed - The subset of genes with preferential gene expression in seed developmental stages.
  3. underground - The subset of genes with preferential gene expression in underground tissues.
  4. Relationship between exon length, percent GC content and specific tissue groups for three classes of exons: the first exon (first), the internal exons (internal) and last exon (last).