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Table 1 Primers used to amplify cotton phytochrome gene family.

From: Duplication, divergence and persistence in the Phytochrome photoreceptor gene family of cottons (Gossypium spp.)

Primer name

Sequence 5' to 3'

Fold-degeneracy

PHYdeg-F

CAYTAYYCIGCIACIGAYATHCC

768

PHYdeg-R

CRCAIGCRTAICKARIGGRWAIGG

16,384

PHYABnondeg-F

GCATTATCCTGCTACTACTGATATT

0

PHYAdeg-R

CAWGCATACCTWAGMGGRAAI

64

PHYBdeg-R

AACAACIAIICCCCAIAGCCTCAT

64

1010-F

GTTYTTGTTTAAGCARAACCG

4

1910-R

GAGTCWCKCAGAATAAGC

4

1910-F

AGCTTATTCTGMGWGACTC

4

2848-R

TAACCCKCTTRTTTGCAGTCA

2

PHYC-1R-DFCI

GGTCCGCCTGATTGAGACTGC

0

  1. I corresponds to inosine. R, Y, M, K, S, W correspond to the IUPAC-IUB ambiguity set.