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Table 3 Genes found differentially expressed by AFLP confirmed by qRT-PCR

From: Identification of genes differentially expressed during interaction of resistant and susceptible apple cultivars (Malus × domestica) with Erwinia amylovora

cDNA sequence and annotation

AFLP profile

Confirmed by qRT PCR

 

cv. M.26

cv. G.41

 

165-M.26-2R protein kinase

2 R

 

N

166-M.26-2R protein kinase

2 R

 

Y

175-G41-48I putative WRKY transcription factor 30

 

48 I

Y

200.1-G41-48I Probable WRKY transcription factor 29

 

48 I

Y

213-G41-48I Probable WRKY transcription factor 65

 

48 I

Y

221-G41-48I WRKY-A1244

 

48 I

Y

200-G41-48I Soluble NSF attachment protein

 

48 I

Y

142-G41-48I Serine/threonine-protein kinase HT1

 

48 I

Y

171.1-G41-48I protein kinase

 

48 I

Y

137.2-G41-48I hypothetical protein B2

 

48 I

Y

176.3-G41-48I protein kinase

 

48 I

Y

171-G41-48I putative leucine-rich repeat transmembrane protein kinase

 

48 I

Y

201.3 G.41-48I Putative leucine-rich repeat transmembrane protein kinase

 

48 I

Y

190-G41-48I Leucine-rich repeat

 

48 I

Y

176.2-G41-48I putative disease resistance protein

 

48 I

Y

201-G41-48I translation initiation factor eIF-4A

 

48 I

Y

201-M.26R LYTB-like protein

48 R

 

Y

12-G41-48I putative aquaporin

 

48 I

Y

175.2-G41-48I beclin 1 protein

 

48 I

Y

177-G41-48I putative senescence-associated protein SAG102

 

48 I

Y

4.3-M.26-2-I MYB11

2 I

 

N

194.5-G41-48I ELIP1 (early light inducible protein)

 

48 I

Y

98-G41-48I chalcone isomerase 4

 

48 I

Y

115-G41-2I chalcone synthase

 

2 I

Y

55.2-M.26R SIR2-family protein

R

 

N

137.1-G41-48I unknown

 

48 I

N

176.1-G41-48I unknown

 

48 I

N

84.2-M.26-2I unknown protein

2 I

 

N

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BMC Plant Biology

ISSN: 1471-2229

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