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  1. Hybridization and polyploidization can be major mechanisms for plant evolution and speciation. Thus, the process of polyploidization and evolutionary history of polyploids is of widespread interest. The specie...

    Authors: Zhen-Zhen Dong, Xing Fan, Li-Na Sha, Yi Wang, Jian Zeng, Hou-Yang Kang, Hai-Qin Zhang, Xiao-Li Wang, Li Zhang, Chun-Bang Ding, Rui-Wu Yang and Yong-Hong Zhou
    Citation: BMC Plant Biology 2015 15:179
  2. Plastome sequences for 18 species of the PACMAD grasses (subfamilies Panicoideae, Aristidoideae, Chloridoideae, Micrairoideae, Arundinoideae, Danthonioideae) were analyzed phylogenomically. Next generation seq...

    Authors: Joseph L. Cotton, William P. Wysocki, Lynn G. Clark, Scot A. Kelchner, J Chris Pires, Patrick P. Edger, Dustin Mayfield-Jones and Melvin R. Duvall
    Citation: BMC Plant Biology 2015 15:178
  3. The actin cytoskeleton is involved in an array of integral structural and developmental processes throughout the cell. One of actin’s best-studied binding partners is the small ubiquitously expressed protein, ...

    Authors: Kristofer J. Müssar, Muthugapatti K. Kandasamy, Elizabeth C. McKinney and Richard B. Meagher
    Citation: BMC Plant Biology 2015 15:177
  4. Striking interspecific variations in floral traits of the large temperate genus Pedicularis have given rise to controversies concerning infra-generic classifications. To date, phylogenetic relationships within th...

    Authors: Wen-Bin Yu, Min-Lu Liu, Hong Wang, Robert R. Mill, Richard H. Ree, Jun-Bo Yang and De-Zhu Li
    Citation: BMC Plant Biology 2015 15:176
  5. MS-based proteomics was applied to the analysis of the medicinal plant Artemisia annua, exploiting a recently published contig sequence database (Graham et al. (2010) Science 327, 328–331) and other genomic and p...

    Authors: Laura Bryant, Brian Flatley, Chhaya Patole, Geoffrey D. Brown and Rainer Cramer
    Citation: BMC Plant Biology 2015 15:175
  6. Although karyologically well studied, the genus Tanacetum (Asteraceae) is poorly known from the perspective of molecular cytogenetics. The prevalence of polyploidy, including odd ploidy warranted an extensive cyt...

    Authors: Nayyereh Olanj, Teresa Garnatje, Ali Sonboli, Joan Vallès and Sònia Garcia
    Citation: BMC Plant Biology 2015 15:174
  7. Development of synthetic allohexaploid Brassica (2n = AABBCC) would be beneficial for agriculture, as allelic contributions from three genomes could increase hybrid vigour and broaden adaptation. Microspore cultu...

    Authors: Annaliese S. Mason, Junko Takahira, Chhaya Atri, Birgit Samans, Alice Hayward, Wallace A. Cowling, Jacqueline Batley and Matthew N. Nelson
    Citation: BMC Plant Biology 2015 15:173
  8. Modifications in root morphology are important strategies to maximize soil exploitation under phosphorus starvation in plants. Here, we used two multiple interval models to map QTLs related to root traits, bio...

    Authors: Gabriel C Azevedo, Adriana Cheavegatti-Gianotto, Bárbara F Negri, Bárbara Hufnagel, Luciano da Costa e Silva, Jurandir V Magalhaes, Antonio Augusto F Garcia, Ubiraci GP Lana, Sylvia M de Sousa and Claudia T Guimaraes
    Citation: BMC Plant Biology 2015 15:172
  9. In dicot Arabidopsis thaliana embryos two cotyledons develop largely autonomously from the shoot apical meristem (SAM). Recessive mutations in the Arabidopsis receptor-like kinase RPK1 lead to monocotyledonous se...

    Authors: Birgit S. Fiesselmann, Miriam Luichtl, Xiaomeng Yang, Michaela Matthes, Ottilie Peis and Ramon A. Torres-Ruiz
    Citation: BMC Plant Biology 2015 15:171
  10. It is well known that salinization (high-pH) has been considered as a major environmental threat to agricultural systems. The aim of this study was to investigate the differences between salt stress and alkali...

    Authors: Rui Guo, Zongze Yang, Feng Li, Changrong Yan, Xiuli Zhong, Qi Liu, Xu Xia, Haoru Li and Long Zhao
    Citation: BMC Plant Biology 2015 15:170
  11. Gene expression inheritance patterns in Arabidopsis hybrid plants were investigated for correlation with the presence of transposable elements (TEs) and small RNA profile.

    Authors: Qing Li, Ying Li, Stephen P. Moose and Matthew E. Hudson
    Citation: BMC Plant Biology 2015 15:168
  12. Petrocosmea Oliver (Gesneriaceae) currently comprises 38 species with four non-nominate varieties, nearly all of which have been described solely from herbarium specimens. However, the dried sp...

    Authors: Zhi-Jing Qiu, Yuan-Xue Lu, Chao-Qun Li, Yang Dong, James F. Smith and Yin-Zheng Wang
    Citation: BMC Plant Biology 2015 15:167
  13. Leaf morphology varies extensively among plant species and is under strong genetic control. Mutagenic screens in model systems have identified genes and established molecular mechanisms regulating leaf initiat...

    Authors: Derek R. Drost, Swati Puranik, Evandro Novaes, Carolina R.D.B. Novaes, Christopher Dervinis, Oliver Gailing and Matias Kirst
    Citation: BMC Plant Biology 2015 15:166
  14. Chrysomela populi (poplar leaf beetle) is a common herbivore in poplar plantations whose infestation causes major economic losses. Because plant volatiles act as infochemicals, we tested whethe...

    Authors: Anna Müller, Moritz Kaling, Patrick Faubert, Gerrit Gort, Hans M Smid, Joop JA Van Loon, Marcel Dicke, Basem Kanawati, Philippe Schmitt-Kopplin, Andrea Polle, Jörg-Peter Schnitzler and Maaria Rosenkranz
    Citation: BMC Plant Biology 2015 15:165
  15. Calcium-dependent protein kinases (CDPKs) play vital roles in plant growth and development, biotic and abiotic stress responses, and hormone signaling. Little is known about the CDPK gene family in grapevine.

    Authors: Kai Zhang, Yong-Tao Han, Feng-Li Zhao, Yang Hu, Yu-Rong Gao, Yan-Fei Ma, Yi Zheng, Yue-Jin Wang and Ying-Qiang Wen
    Citation: BMC Plant Biology 2015 15:164
  16. Rice is a major crop worldwide. Bacterial blight (BB) caused by Xanthomonas oryzae pv. oryzae (Xoo) has become one of the most devastating diseases for rice. It has been clear that phosphorylation plays essential...

    Authors: Yuxuan Hou, Jiehua Qiu, Xiaohong Tong, Xiangjin Wei, Babi R. Nallamilli, Weihuai Wu, Shiwen Huang and Jian Zhang
    Citation: BMC Plant Biology 2015 15:163
  17. The flavan-3-ols catechin and epicatechin, and their polymerized oligomers, the proanthocyanidins (PAs, also called condensed tannins), accumulate to levels of up to 15 % of the total weight of dry seeds of Theob...

    Authors: Yi Liu, Zi Shi, Siela N. Maximova, Mark J. Payne and Mark J. Guiltinan
    Citation: BMC Plant Biology 2015 15:160
  18. Sharka is caused by Plum pox virus (PPV) in stone fruit trees. In orchards, the virus is transmitted by aphids and by grafting. In Arabidopsis, PPV is transferred by mechanical inoculation, by biolistics and by a...

    Authors: S. Poque, G. Pagny, L. Ouibrahim, A. Chague, J-P Eyquard, M. Caballero, T. Candresse, C. Caranta, S. Mariette and V. Decroocq
    Citation: BMC Plant Biology 2015 15:159
  19. Cork oak (Quercus suber L.) has a natural distribution across western Mediterranean regions and is a keystone forest tree species in these ecosystems. The fruiting phase is especially critical for its regeneratio...

    Authors: Andreia Miguel, José de Vega-Bartol, Liliana Marum, Inês Chaves, Tatiana Santo, José Leitão, Maria Carolina Varela and Célia M. Miguel
    Citation: BMC Plant Biology 2015 15:158
  20. Ethylene plays critical roles in plant growth and development, including the regulation of cell expansion, senescence, and the response to biotic and abiotic stresses. Elements of the initial signal transducti...

    Authors: Muneeza Iqbal Rai, Xiaomin Wang, Derek M. Thibault, Hyo Jung Kim, Matthew M. Bombyk, Brad M. Binder, Samina N. Shakeel and G. Eric Schaller
    Citation: BMC Plant Biology 2015 15:157
  21. Grain length, as a critical trait for rice grain size and shape, has a great effect on grain yield and appearance quality. Although several grain size/shape genes have been cloned, the genetic interaction amon...

    Authors: Xiuying Gao, Xiaojun Zhang, Hongxia Lan, Ji Huang, Jianfei Wang and Hongsheng Zhang
    Citation: BMC Plant Biology 2015 15:156
  22. Leucine-rich repeat extensins (LRXs) are extracellular proteins consisting of an N-terminal leucine-rich repeat (LRR) domain and a C-terminal extensin domain containing the typical features of this class of st...

    Authors: Christian Draeger, Tohnyui Ndinyanka Fabrice, Emilie Gineau, Grégory Mouille, Benjamin M. Kuhn, Isabel Moller, Marie-Therese Abdou, Beat Frey, Markus Pauly, Antony Bacic and Christoph Ringli
    Citation: BMC Plant Biology 2015 15:155
  23. Georgia, in the Caucasian region, is considered the first domestication centre of grapevine. This country is characterized by high morphological variability of cultivated (Vitis vinifera L. subsp. sativa (DC.) He...

    Authors: Gabriella De Lorenzis, Ramaz Chipashvili, Osvaldo Failla and David Maghradze
    Citation: BMC Plant Biology 2015 15:154
  24. Cellulose from grasses and cereals makes up much of the potential raw material for biofuel production. It is not clear if cellulose microfibrils from grasses and cereals differ in structure from those of other...

    Authors: Lynne H. Thomas, V. Trevor Forsyth, Anne Martel, Isabelle Grillo, Clemens M. Altaner and Michael C. Jarvis
    Citation: BMC Plant Biology 2015 15:153
  25. Hexaploid wheat (Triticum aestivum) is a globally important crop. Heat, drought and their combination dramatically reduce wheat yield and quality, but the molecular mechanisms underlying wheat tolerance to extrem...

    Authors: Zhenshan Liu, Mingming Xin, Jinxia Qin, Huiru Peng, Zhongfu Ni, Yingyin Yao and Qixin Sun
    Citation: BMC Plant Biology 2015 15:152
  26. Heat shock factors (Hsfs) play crucial roles in plant developmental and defence processes. The production and quality of pepper (Capsicum annuum L.), an economically important vegetable crop, are severely reduced...

    Authors: Meng Guo, Jin-Ping Lu, Yu-Fei Zhai, Wei-Guo Chai, Zhen-Hui Gong and Ming-Hui Lu
    Citation: BMC Plant Biology 2015 15:151
  27. Russeting is a disorder developed by apple fruits that consists of cuticle cracking followed by the replacement of the epidermis by a corky layer that protects the fruit surface from water loss and pathogens. ...

    Authors: Luigi Falginella, Guido Cipriani, Corinne Monte, Roberto Gregori, Raffaele Testolin, Riccardo Velasco, Michela Troggio and Stefano Tartarini
    Citation: BMC Plant Biology 2015 15:150
  28. Miniature inverted repeat transposable elements (MITEs) are important components of eukaryotic genomes, with hundreds of families and many copies, which may play important roles in gene regulation and genome e...

    Authors: Shutao Dai, Jinna Hou, Yan Long, Jing Wang, Cong Li, Qinqin Xiao, Xiaoxue Jiang, Xiaoxiao Zou, Jun Zou and Jinling Meng
    Citation: BMC Plant Biology 2015 15:149
  29. Gossypium raimondii is a Verticillium wilt-resistant cotton species whose genome encodes numerous disease resistance genes that play important roles in the defence against pathogens. However, t...

    Authors: Jie-Yin Chen, Jin-Qun Huang, Nan-Yang Li, Xue-Feng Ma, Jin-Long Wang, Chuan Liu, Yong-Feng Liu, Yong Liang, Yu-Ming Bao and Xiao-Feng Dai
    Citation: BMC Plant Biology 2015 15:148
  30. Camelina (Camelina sativa L.) is well known for its high unsaturated fatty acid content and great resistance to environmental stress. However, little is known about the molecular mechanisms of unsaturated fatty a...

    Authors: Fawei Wang, Huan Chen, Xiaowei Li, Nan Wang, Tianyi Wang, Jing Yang, Lili Guan, Na Yao, Linna Du, Yanfang Wang, Xiuming Liu, Xifeng Chen, Zhenmin Wang, Yuanyuan Dong and Haiyan Li
    Citation: BMC Plant Biology 2015 15:147
  31. Natural hybridization in plants is universal and plays an important role in evolution. Based on morphology it has been presumed that hybridization occurred in the genus Buddleja, though genetic studies confirming...

    Authors: Rong-Li Liao, Yong-Peng Ma, Wei-Chang Gong, Gao Chen, Wei-Bang Sun, Ren-Chao Zhou and Tobias Marczewski
    Citation: BMC Plant Biology 2015 15:146
  32. Due to its biennual life cycle Brassica oleracea is especially exposed to seasonal changes in temperature that could limit its growth and fitness. Thermal stress could limit plant growth, leaf development and pho...

    Authors: Víctor M. Rodríguez, Pilar Soengas, Virginia Alonso-Villaverde, Tamara Sotelo, María E. Cartea and Pablo Velasco
    Citation: BMC Plant Biology 2015 15:145
  33. MicroRNAs are the key post-transcriptional regulators of gene expression in development and stress responses. Thus, precisely quantifying the level of each particular microRNA is of utmost importance when stud...

    Authors: Andrzej Zielezinski, Jakub Dolata, Sylwia Alaba, Katarzyna Kruszka, Andrzej Pacak, Aleksandra Swida-Barteczka, Katarzyna Knop, Agata Stepien, Dawid Bielewicz, Halina Pietrykowska, Izabela Sierocka, Lukasz Sobkowiak, Alicja Lakomiak, Artur Jarmolowski, Zofia Szweykowska-Kulinska and Wojciech M. Karlowski
    Citation: BMC Plant Biology 2015 15:144
  34. Matrix metalloproteinases (MMPs) are a family of zinc-dependent endopeptidases. MMPs have been characterized in detail in mammals and shown to play key roles in many physiological and pathological processes. A...

    Authors: Dayong Li, Huijuan Zhang, Qiuming Song, Lu Wang, Shixia Liu, Yongbo Hong, Lei Huang and Fengming Song
    Citation: BMC Plant Biology 2015 15:143
  35. The objective of the work was to characterize fungal endophytes from aerial parts of Vanilla planifolia. Also, to establish their biotransformation abilities of flavor-related metabolites. This was done in order ...

    Authors: Shahnoo Khoyratty, Joëlle Dupont, Sandrine Lacoste, Tony Lionel Palama, Young Hae Choi, Hye Kyong Kim, Bertrand Payet, Michel Grisoni, Mireille Fouillaud, Robert Verpoorte and Hippolyte Kodja
    Citation: BMC Plant Biology 2015 15:142
  36. Drought is a major abiotic stress factors that reduces agricultural productivity. GRAS transcription factors are plant-specific proteins that play diverse roles in plant development. However, the functions of ...

    Authors: Kai Xu, Shoujun Chen, Tianfei Li, Xiaosong Ma, Xiaohua Liang, Xuefeng Ding, Hongyan Liu and Lijun Luo
    Citation: BMC Plant Biology 2015 15:141
  37. MicroRNAs (miRNAs) are endogenous, noncoding, short RNAs directly involved in regulating gene expression at the post-transcriptional level. In spite of immense importance, limited information of P. vulgaris miRNA...

    Authors: Chandran Nithin, Nisha Patwa, Amal Thomas, Ranjit Prasad Bahadur and Jolly Basak
    Citation: BMC Plant Biology 2015 15:140
  38. Agarwood, a heartwood derived from Aquilaria trees, is a valuable commodity that has seen prevalent use among many cultures. In particular, it is widely used in herbal medicine and many compounds in agarwood are ...

    Authors: Tony Chien-Yen Kuo, Chuan-Hung Chen, Shu-Hwa Chen, I-Hsuan Lu, Mei-Ju Chu, Li-Chun Huang, Chung-Yen Lin, Chien-Yu Chen, Hsiao-Feng Lo, Shih-Tong Jeng and Long-Fang O. Chen
    Citation: BMC Plant Biology 2015 15:139
  39. Korean ginseng (Panax ginseng C.A. Meyer) is a highly effective medicinal plant containing ginsenosides with various pharmacological activities, whose roots are produced commercially for crude drugs.

    Authors: Murukarthick Jayakodi, Sang-Choon Lee, Yun Sun Lee, Hyun-Seung Park, Nam-Hoon Kim, Woojong Jang, Hyun Oh Lee, Ho Jun Joh and Tae-Jin Yang
    Citation: BMC Plant Biology 2015 15:138
  40. Cruciferous plants synthesize a large variety of tryptophan-derived phytoalexins in response to pathogen infection, UV irradiation, or high dosages of heavy metals. The major phytoalexins of Eutrema salsugineum (

    Authors: Stefanie Mucha, Dirk Walther, Teresa M Müller, Dirk K Hincha and Erich Glawischnig
    Citation: BMC Plant Biology 2015 15:137
  41. An optimal seedling development of Brassica napus plants leads to a higher yield stability even under suboptimal growing conditions and has therefore a high importance for plant breeders. The objectives of our st...

    Authors: Niklas Körber, Anja Bus, Jinquan Li, Janet Higgins, Ian Bancroft, Erin Eileen Higgins, Isobel Alison Papworth Parkin, Bertha Salazar-Colqui, Rod John Snowdon and Benjamin Stich
    Citation: BMC Plant Biology 2015 15:136
  42. An important signal transduction pathway in plant defence depends on the accumulation of salicylic acid (SA). SA is produced in chloroplasts and the multidrug and toxin extrusion transporter ENHANCED DISEASE S...

    Authors: Nonglak Parinthawong, Stéphanie Cottier, Antony Buchala, Christiane Nawrath and Jean-Pierre Métraux
    Citation: BMC Plant Biology 2015 15:135
  43. The evolutionary basis of reproductive success in different environments is of major interest in the study of plant adaptation. Since the reproductive stage is particularly sensitive to drought, genes affectin...

    Authors: Sariel Hübner, Abraham B. Korol and Karl J. Schmid
    Citation: BMC Plant Biology 2015 15:134
  44. PsbO, the manganese-stabilising protein, is an indispensable extrinsic subunit of photosystem II. It plays a crucial role in the stabilisation of the water-splitting Mn4CaO5 cluster, which catalyses the oxidation...

    Authors: Miloš Duchoslav and Lukáš Fischer
    Citation: BMC Plant Biology 2015 15:133
  45. Solanum lycopersicum and Solanum habrochaites are closely related plant species; however, their cold tolerance capacities are different. The wild species S. habrochaites is more cold tolerant t...

    Authors: Hongyu Chen, Xiuling Chen, Dong Chen, Jingfu Li, Yi Zhang and Aoxue Wang
    Citation: BMC Plant Biology 2015 15:132
  46. Long non-coding RNAs (lncRNAs) have been shown to play crucially regulatory roles in diverse biological processes involving complex mechanisms. However, information regarding the number, sequences, characteris...

    Authors: Tian-Zuo Wang, Min Liu, Min-Gui Zhao, Rujin Chen and Wen-Hao Zhang
    Citation: BMC Plant Biology 2015 15:131
  47. The gibberellin (GA) pathway plays a central role in the regulation of plant development, with the 2-oxoglutarate-dependent dioxygenases (2-ODDs: GA20ox, GA3ox, GA2ox) that catalyse the later steps in the bios...

    Authors: Stephen Pearce, Alison K Huttly, Ian M Prosser, Yi-dan Li, Simon P Vaughan, Barbora Gallova, Archana Patil, Jane A Coghill, Jorge Dubcovsky, Peter Hedden and Andrew L Phillips
    Citation: BMC Plant Biology 2015 15:130

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