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Table 2 Analysis of molecular variance (AMOVA) based on the cpDNA sequences

From: Phylogeography of cultivated and wild ophiopogon japonicus based on chloroplast DNA: exploration of the origin and sustainable cultivation

Source of variation

d.f.

Sum of squares

Variance components

Percentage of variation

Fixatio indices

P-value

Species

Among populations

23

1895.165

7.10101 Va

80.87

FST = 0.78097

0

Within populations

250

419.988

1.67995 Vb

19.13

  

Wild

Among populations

12

1016.788

8.09993 Va

70.09

FST = 0.70087

0

Within populations

119

411.378

3.45696 Vb

29.91

  

Cultivated

Among populations

9

452.518

3.75356 Va

95.51

FST = 0.95514

0

Within populations

124

21.863

0.17631 Vb

4.49

  

Cultivated vs. Wild

Among groups

1

369.238

2.19366 Va

22.09

FSC = 0.76952

0

Among populations within groups

21

1469.307

5.95263 Vb

59.95

FST = 0.82044

0

Within populations

243

433.241

1.78288 Vc

17.96

FCT = 0.22093

0.0081

CMD vs. ZMD

Among groups

1

451.033

9.92018 Va

98.25

FSC = 0.00383

1

Among populations within groups

8

1.485

0.00068 Vb

0.01

FST = 0.98254

0

Within populations

124

21.863

0.17631 Vc

1.75

FCT = 0.98247

0.00502

CMD vs. Wild

Among groups

1

585.659

4.45178 Va

40.3

FSC = 0.70800

0

Among populations within groups

18

1017.159

4.66986 Vb

42.27

FST = 0.82566

0

Within populations

217

417.94

1.92599 Vc

17.43

FCT = 0.40296

0

ZMD vs. Wild

Among groups

1

117.718

0.93887 Va

8.64

FSC = 0.70376

0

Among populations within groups

14

1017.902

6.99048 Vb

64.3

FST = 0.72934

0

Within populations

145

426.678

2.94261 Vc

27.07

FCT = 0.08636

0.13675

  1. Note: FST: Genetic differentiation among populations; FSC: genetic differentiation among population within groups; FCT: Genetic differentiation between groups