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Table 3 Genes annotated in Paeonia plastomes

From: The plastome reveals new insights into the evolutionary and domestication history of peonies in East Asia

Category

Gene functions

Names of genes

Self-replication

DNA-dependent RNA polymerase

rpoA, B, C1, C2

Self-replication

Large subunit of ribosomal proteins

rpl2, 14, 16, 20, 22, 23, 33, 36

Self-replication

rRNA genes

rrn16, rrn23, rrn4.5, rrn5

Self-replication

Small subunit of ribosomal proteins

rps11, rps12, rps14, rps15, rps16, rps18, rps19, rps2, rps3, rps4, rps7, rps8

Self-replication

tRNA genes

trnA-UGC, trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnG-GCC, trnG-UCC, trnH-GUG, trnI-CAU, trnI-GAU, trnK-UUU, trnL-CAA, trnL-UAA, trnL-UAG, trnM-CAU, trnN-GUU, trnP-GGG, trnQ-UUG, trnR-ACG, trnR-UCU, trnS-GCU, trnS-GGA, trnS-UGA, trnT-GGU, trnT-UGU, trnV-GAC, trnV-UAC, trnW-CCA, trnY-GUA

Photosynthesis

ATP synthase

atpA, B, E, F, H, I

Photosynthesis

Cytochrome b6/f complex

petA, B, D, G, L, N

Photosynthesis

NADH oxidoreductase

ndhA, B, C, D, E, F, G, H, I, J, K

Photosynthesis

photosystem assembly factor

pafI, pafII

Photosynthesis

Photosystem I

psaA, B, C, I, J

Photosynthesis

Photosystem II

psbA, B, C, D, E, F, H, I, J, K, L, M, T, Z

Photosynthesis

Rubisco

rbcL

Other genes

c-Type cytochrome synthesis gene

ccsA

Other genes

Conserved open reading frames

ycf1, 2

Other genes

Envelope membrane protein

cemA

Other genes

Maturase

matK

Other genes

Protease

clpP1

Other genes

Subunit acetyl-CoA-carboxylase

accD