Table 1 Gene expression obtained from RNA sequencing between R-isolines and S-isolines of two pairs of near-isogenic lines (NILs) across the whole genome, on chromosome 4Â A and within Qsns.uwa.4Â A.2
Treatment | Expression pattern | NIL pairs | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
NIL_3 | Â | NIL_17 | Â | Common | ||||||
Genome | Chromosome 4A | Â | Genome | Chromosome 4A | Â | Genome | DEGs on Chromosome 4A | DEGs within QTL* | ||
Control | Upregulated | 5164 (3.7%) | 282 (4.2%) | Â | 1276 (0.9%) | 51 (0.7%) | Â | 113 (0.1%) | 2 (0.03%) | 0 |
Downregulated | 4698 (3.3%) | 244 (3.6%) | Â | 1184 (0.8%) | 69 (1.0%) | Â | 86 (0.1%) | 5 (0.1%) | 3 | |
Total | 9862 (7.0%) | 526 (7.9%) | Â | 2460 (1.7%) | 120 (1.8%) | Â | 199 (0.1%) | 7 (0.1%) | 3 | |
Treatment | Upregulated | 1852 (1.3%) | 138 (2.0%) | Â | 2371 (1.7%) | 110 (1.6%) | Â | 59 (0.04%) | 6 (0.1%) | 3 |
Downregulated | 3456 (2.4%) | 203 (3.0%) | Â | 3931 (2.8%) | 171 (2.5%) | Â | 238 (0.2%) | 6 (0.1%) | 3 | |
Total | 5308 (3.7%) | 341 (5.1%) | Â | 6302 (4.5%) | 281 (4.1%) | Â | 297 (0.2%) | 12 (0.2%) | 6 | |