Table 2 Comparation of TEs in three Rhodiola organelle genomes
Type | R. crenulata | R. wallichiana | R. sacra | |||
|---|---|---|---|---|---|---|
Plastome | Mitogenome | Plastome | Mitogenome | Plastome | Mitogenome | |
DNA transposon (bp) | 9,136 | 3,381 | 8,811 | 2,954 | 8,623 | 3,537 |
EnSpm/CACTA | 1,160 | 414 | 1,062 | 237 | 963 | 716 |
Harbinger | 130 | 75 | 80 | 64 | / | 73 |
Helitron | 3,442 | 446 | 3,192 | 404 | 3,094 | 631 |
Mariner/Tc1 | / | 140 | / | 174 | / | 79 |
MuDR | 3,385 | 2,081 | 3,503 | 1,843 | 3,600 | 1,420 |
hAT | 1019 | 225 | 889 | 232 | 907 | 618 |
LTR Retrotransposon (bp) | 5,027 | 7,333 | 4,859 | 3,302 | 5,145 | 4,887 |
Copia | 3,523 | 3,898 | 3,477 | 1,760 | 3,524 | 1,975 |
Gypsy | 1,321 | 3,435 | 1,199 | 1,501 | 1,375 | 2,912 |
Non-LTR Retrotransposon (bp) | 229 | 969 | 236 | 374 | 320 | 374 |
L1 | 174 | 845 | 181 | 326 | 265 | 326 |
Penelope | / | 76 | / | / | / | / |
Naiad/Chlamys | / | 76 | / | / | / | / |
RTE | / | 48 | / | 48 | / | 48 |
SINE | 55 | / | 55 | / | 55 | / |
SINE2/tRNA | 55 | / | 55 | / | 55 | / |
Total | 14,392 | 11,683 | 13,906 | 6,630 | 14,088 | 8,798 |
Ratio | 9.50% | 6% | 9.20% | 3.30% | 9.30% | 4.20% |