Table 1 Characteristics of the 37 Cactaceae plastomes
Species | NCBI Accession No. | Genome Size (bp) | LSC (bp) | SSC (bp) | IR (bp) | Total GC (%) | No. total Genes | No. PCGs | No. | No. |
|---|---|---|---|---|---|---|---|---|---|---|
tRNAs | rRNAs | |||||||||
Cereus jamacaru | / | 143,493 | 53,377 | 23,778 | 33,169 | 36.64 | 95 (25) | 64 (12) | 27 (13) | 4 |
Acanthocereus tetragonus | MW553073 | 142,663 | 53,494 | 23,777 | 32,696 | 36.64 | 95 (25) | 64 (12) | 27 (13) | 4 |
Praecereus euchlorus | / | 135,580 | 51,279 | 10,467 | 36,917 | 36.67 | 95 (28) | 64 (14) | 27 (14) | 4 |
Pilosocereus pachycladus | MW553065 | 133,372 | 52,759 | 19,329 | 30,642 | 36.56 | 94 (25) | 63 (12) | 27 (13) | 4 |
Coleocephalocereus fluminensis | / | 128,523 | 52,445 | 21,314 | 27,382 | 36.31 | 95 (25) | 64 (12) | 27 (13) | 4 |
Gymnocalycium saglionis | MW553054 | 124,390 | 50,666 | 16,326 | 28,699 | 37.09 | 92 (25) | 61 (12) | 27 (13) | 4 |
Espostoa lanata | MW553052 | 127,175 | 50,979 | 19,440 | 28,378 | 37.01 | 96 (25) | 64 (12) | 28 (13) | 4 |
Matucana haynei | MW553051 | 126,870 | 51,077 | 19,219 | 28,287 | 37.08 | 96 (25) | 64 (12) | 28 (13) | 4 |
Cleistocactus winteri | MW553046 | 128,809 | 50,944 | 18,855 | 29,505 | 37.02 | 96 (25) | 63 (12) | 29 (13) | 4 |
Echinopsis mirabilis | / | 126,622 | 52,505 | 18,915 | 27,601 | 37.18 | 92 (25) | 61 (12) | 27 (13) | 4 |
Rebutia pygmaea | / | 124,473 | 53,272 | 18,843 | 26,179 | 37.53 | 94 (21) | 62 (11) | 28 (10) | 4 |
Parodia scopa | MW553045 | 126,253 | 48,479 | 18,092 | 29,841 | 36.84 | 96 (26) | 64 (13) | 28 (13) | 4 |
Yavia cryptocarpa | / | 143,783 | 53,677 | 15,734 | 37,186 | 36.35 | 96 (26) | 64 (15) | 28 (11) | 4 |
Rhipsalis cereuscula | MW553066 | 123,009 | 79,737 | 22,890 | 10,191 | 36.59 | 99 (4) | 66 (2) | 29 (2) | 4 |
Schlumbergera truncata | MW553067 | 121,718 | 79,780 | 21,978 | 9,980 | 36.33 | 99 (4) | 67 (2) | 28 (2) | 4 |
Frailea castanea var. nitens | MW553053 | 110,388 | 81,002 | 28,512 | 437 | 36.31 | 94 (2) | 62 (0) | 28 (2) | 4 |
Cephalocereus senilis | / | 120,812 | 81,561 | 21,267 | 8,992 | 36.59 | 95 (4) | 63 (2) | 28 (2) | 4 |
Neobuxbaumia polylopha | MW553061 | 128,889 | 80,969 | 13,942 | 16,989 | 36.39 | 94 (7) | 62 (3) | 28 (4) | 4 |
Carnegiea gigantea | NC_027618.1 | 113,064 | / | / | No IR | 36.68 | 96 (0) | 64 (0) | 28 (0) | 4 |
Lophocereus schottii | NC_041727.1 | 113,204 | / | / | No IR | 36.5 | 96 (0) | 64 (0) | 28 (0) | 4 |
Deamia testudo | / | 121,008 | 81,371 | 21,909 | 8,864 | 36.59 | 95 (2) | 63 (0) | 28 (2) | 4 |
Myrtillocactus geometrizans | MW553060 | 133,639 | 81,748 | 15,835 | 18,028 | 35.97 | 97 (8) | 65 (5) | 28 (3) | 4 |
Echinocereus pentalophus | MW553049 | 128,011 | 81,452 | 18,873 | 13,843 | 36.28 | 97 (6) | 65 (2) | 28 (4) | 4 |
Selenicereus undatus | MW553056 | 133,407 | 68,516 | 21,773 | 21,559 | 36.38 | 98 (16) | 65 (8) | 29 (8) | 4 |
Epiphyllum oxypetalum | MW553050 | 120,360 | 81,611 | 21,043 | 8,853 | 36.56 | 96 (3) | 64 (1) | 28 (2) | 4 |
Copiapoa hypogaea | MW553047 | 132,285 | 82,845 | 20,600 | 14,420 | 35.8 | 100 (6) | 67 (4) | 29 (2) | 4 |
Calymmanthium substerile | / | 120,777 | 81,982 | 24,061 | 7,367 | 36.59 | 100 (3) | 67 (1) | 29 (2) | 4 |
Leuchtenbergia principis | MW553057 | 116,863 | 81,621 | 32,158 | 1,542 | 36.18 | 96 (2) | 63 (1) | 29 (1) | 4 |
Thelocactus setispinus | MW553071 | 110,524 | 78,924 | 30,884 | 358 | 36.17 | 94 (0) | 61 (0) | 29 (0) | 4 |
Ferocactus latispinus | MW553072 | 116,692 | 82,072 | 31,682 | 1,469 | 36.25 | 96 (2) | 63 (1) | 29 (1) | 4 |
Echinocactus grusonii | MW553048 | 119,201 | 82,732 | 32,771 | 1,849 | 36.13 | 100 (2) | 67 (1) | 29 (1) | 4 |
Mammillaria gracilis | MW553059 | 110,855 | 77,223 | 30,246 | 1,693 | 36.46 | 95 (2) | 63 (1) | 28 (1) | 4 |
Obregonia denegrii | MW553062 | 118,438 | 74,449 | 31,769 | 6,110 | 36.67 | 94 (6) | 62 (3) | 28 (3) | 4 |
Ariocarpus retusus | MW553043 | 117,264 | 81,642 | 32,170 | 1,726 | 36.12 | 98 (2) | 66 (1) | 28 (1) | 4 |
Astrophytum myriostigma | MW553044 | 119,769 | 83,710 | 32,131 | 1,964 | 35.92 | 102 (4) | 69 (3) | 29 (1) | 4 |
Opuntia microdasys | MW553063 | 123,169 | 88,758 | 31,493 | 1,459 | 36.09 | 111 (3) | 77 (0) | 30 (3) | 4 |
Pereskia aculeata | MW553064 | 141,752 | 88,214 | 34,726 | 9,406 | 35.8 | 113 (5) | 79 (3) | 30 (2) | 4 |