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Table 1 Primers for amplification of various loci from Azolla genomic DNA

From: Ecological distribution and genetic diversity of Azolla in Uganda

Primer name

Primer sequence

Reference

Targeted locus

Sequence Length (bp)

ITS1

ITS4

5′ TCCGTAGGTGAACCTGCGG 3′

5′ TCCTCCGCTTATTGATATGC 3′

[32]

Internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2

984

N-F

N-R

5′ GGTTCAAGTCCCTCTATCCC 3′

5′ ATTTGAACTGGTGACACGAG 3′

[26]

trnL – trnF intergenic spacer

409

SCAR-F

SCAR-R

5′GACATATCCACCTATCGTCTCTGTC 3′

5′AGACAACTTCGATAGTCACAGTTCC 3′

[1]

Internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2

842

18Sr-F

18Sr-R

5′ AGGGTTCGATTCCGGAGA 3′

5′ CCTTCCGTCAATTCCTTTAAG 3‘

[6]

trnL gene and trnL-trnF intergenic spacer

1029