Fig. 10

WGCNA of the transcripts in WT, 35S::bHLH and P_bHLH::bHLH Arabidopsis lines under salt treatment. A Gene dendrograms of the whole-transcriptome profiles were constructed using average linkage hierarchical clustering, each line represents one gene. The module color underneath the cluster tree shows the results of module assignment by the dynamic tree cut. B Correlations between modules eigengenes and different lines. The color of each module is the same as that in (A). The gene number of each module is shown in the bottom of the module name. The correlation coefficient and p-value are shown in each cell. C Scatterplots of gene significance versus module membership for the blue module. D Co-expression network of members in blue module. The largest inner circle represents the hub gene, and the relationships of all the genes are connected by lines. A: wild type (Col-0); B: 35S::bHLH-overexpressing transgenic Arabidopsis; C: P_bHLH::bHLH-overexpressing transgenic Arabidopsis; (C): normal condition; (S): salt treatment