Table 1 Comparative genome statistics of samples
Sample | Total reads | Total map | Unique map | Multi map | Mapping rate (%) |
|---|---|---|---|---|---|
CK-0–1 | 46,815,702 | 42,910,019 | 40,899,591(87.36%) | 2,010,428(4.29%) | 91.66% |
CK_0_2 | 46,919,124 | 42,880,938 | 40,775,136(86.91%) | 2,105,802(4.49%) | 91.39% |
CK_0_3 | 45,916,162 | 42,104,871 | 40,017,119(87.15%) | 2,087,752(4.55%) | 91.70% |
LG_0_1 | 46,769,434 | 42,497,124 | 40,923,834(87.5%) | 1,573,290(3.36%) | 90.87% |
LG_0_2 | 44,727,404 | 40,601,250 | 39,100,103(87.42%) | 1,501,147(3.36%) | 90.77% |
LG_0_3 | 43,111,468 | 39,537,923 | 37,614,568(87.25%) | 1,923,355(4.46%) | 91.71% |
HG_0_1 | 46,684,610 | 42,938,303 | 40,777,893(87.35%) | 2,160,410(4.63%) | 91.98% |
HG_0_2 | 45,715,822 | 41,919,574 | 39,764,745(86.98%) | 2,154,829(4.71%) | 91.70% |
HG_0_3 | 51,812,850 | 47,721,232 | 45,354,018(87.53%) | 2,367,214(4.57%) | 92.10% |
CK_30_1 | 46,770,276 | 43,229,185 | 41,469,671(88.67%) | 1,759,514(3.76%) | 92.43% |
CK_30_2 | 46,087,118 | 42,530,822 | 40,909,769(88.77%) | 1,621,053(3.52%) | 92.28% |
CK_30_3 | 50,775,950 | 46,563,721 | 44,146,740(86.94%) | 2,416,981(4.76%) | 91.70% |
LG_30_1 | 44,439,024 | 41,026,549 | 39,462,059(88.8%) | 1,564,490(3.52%) | 92.32% |
LG_30_2 | 46,805,200 | 43,226,074 | 41,570,186(88.82%) | 1,655,888(3.54%) | 92.35% |
LG_30_3 | 44,743,018 | 40,935,834 | 39,281,645(87.79%) | 1,654,189(3.7%) | 91.49% |
HG_30_1 | 48,011,460 | 44,131,637 | 42,367,279(88.24%) | 1,764,358(3.67%) | 91.92% |
HG_30_2 | 47,257,916 | 43,528,792 | 41,720,947(88.28%) | 1,807,845(3.83%) | 92.11% |
HG_30_3 | 46,156,508 | 42,433,078 | 40,956,718(88.73%) | 1,476,360(3.2%) | 91.93% |
CK_50_1 | 46,450,880 | 41,971,359 | 39,989,166(86.09%) | 1,982,193(4.27%) | 90.36% |
CK_50_2 | 44,037,090 | 40,404,986 | 38,490,509(87.4%) | 1,914,477(4.35%) | 91.75% |
CK_50_3 | 49,358,510 | 45,429,117 | 43,281,381(87.69%) | 2,147,736(4.35%) | 92.04% |
HG_50_1 | 44,787,148 | 40,771,025 | 39,010,023(87.1%) | 1,761,002(3.93%) | 91.03% |
HG_50_2 | 48,294,500 | 44,388,897 | 42,618,190(88.25%) | 1,770,707(3.67%) | 91.91% |
HG_50_3 | 42,958,006 | 39,350,379 | 37,781,609(87.95%) | 1,568,770(3.65%) | 91.60% |
LG_50_1 | 45,946,054 | 42,287,132 | 40,654,703(88.48%) | 1,632,429(3.55%) | 92.04% |
LG_50_2 | 45,088,374 | 41,649,863 | 40,047,536(88.82%) | 1,602,327(3.55%) | 92.37% |
LG_50_3 | 45,204,254 | 41,657,387 | 39,812,720(88.07%) | 1,844,667(4.08%) | 92.15% |