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Table 5 Variable nucleotide sites in gametophytic male sterility orfH79 gene and its variance (GSV)

From: Investigation of B-atp6-orfH79 distributing in Chinese populations of Oryza rufipogon and analysis of its chimeric structure

Haplotype or accession number

No

Nucleotide Site

4

1

3

6

7

9

5

1

4

2

1

4

6

1

4

7

1

7

8

2

2

6

H2

A

C

T

T

T

A

C

T

?

H1

 

G

  

G

 

A

C

 

H3

G

G

  

A

C

T

  

orfH79

        

G

orf79

G

G

  

A

 

A

C

G

L-orf79

G

G

  

A

C

A

C

G

YtA

        

G

W11

    

A

  

C

G

W15

        

G

W20

        

A

W21

    

A

 

A

C

G

W29

   

C

A

C

T

C

G

W34

G

G

C

 

A

 

A

C

G

W42

        

G

W46

G

G

  

A

 

A

C

G

LR794116 (H12)

G

G

  

A

C

T

 

G

LR794113 (H9)

G

G

  

A

 

A

C

G

LR794114 (H10)

G

G

  

A

 

A

C

G

LR794110 (H8)

G

G

  

A

 

A

C

G

LR794112 (H5)

G

G

  

A

 

A

C

G

LR794109 (H5)

G

G

  

A

 

A

C

G

LR794115 (H11)

G

G

  

A

C

T

C

G

LR794123 (H18)

G

G

  

C

C

T

C

G

LR794111 (H7)

G

G

  

A

C

A

C

G

LR794108 (H4)

G

G

  

A

 

A

C

G

LR794119 (H14)

        

G

LR794120 (H15)

        

G

LR794118 (H2)

        

G

LR794117 (H13)

       

C

G

LR794121 (H16)

 

G

  

A

 

A

C

G

LR794122 (H17)

 

G

  

G

 

A

C

G

  1. ., indicates that the character states are the same as H2 haplotype;?, Indicate the character states are unknown. Haolotypes YtA, W11, W15, W20, W21, W29, W34, W42, and W46 have been described in the reference of Li et al., 2008. L-orf79 has been described in the reference of Kazama et al.2016, while orf79 described in the report of Wang et al.2006. LR794116- LR794122 were the sequences of B-atp6-orfH79 in the reference of He et al. 2020 and their GSV sections were renamed as H2, H3-H18, according to the above mentioned method in this study. The same base plate color indicates the same haplotype
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BMC Plant Biology

ISSN: 1471-2229

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