Table 3 The codon usage patterns of the V. harmandiana chloroplast genome
Amino acid | Codon | Percentage | tRNA |
|---|---|---|---|
Phenylalanine (F) | TTT | 3.828 | Â |
TTC | 2.030 | trnF-GAA | |
Phenylalanine percentage | 5.858 | Â | |
Leucine (L) | TTA | 3.184 | trnL-UAA |
TTG | 2.160 | trnL-CAA(×2) | |
CTT | 2.220 | Â | |
CTC | 0.719 | Â | |
CTA | 1.441 | trnL-UAG | |
CTG | 0.786 | Â | |
Leucine percentage | 10.510 | Â | |
Isoleucine (I) | ATT | 4.111 | Â |
ATC | 1.680 | trnI-GAU(×2) | |
ATA | 2.827 | trnfM-CAU | |
Isoleucine percentage | 8.618 | Â | |
Methionine (M) | ATG | 2.279 | trnM-CAU |
Methionine percentage | 2.279 | Â | |
Valine (V) | GTT | 2.007 | trnI-CAU(×2) |
GTC | 0.626 | trnV-GAC(×2) | |
GTA | 1.989 | trnV-UAC | |
GTG | 0.786 | Â | |
Valine percentage | 5.407 | Â | |
Serine (S) | TCT | 2.086 | Â |
TCC | 1.210 | trnS-GGA | |
TCA | 1.505 | trnS-UGA | |
TCG | 0.790 | Â | |
AGT | 1.397 | Â | |
AGC | 0.547 | trnS-GCU | |
Serine percentage | 7.534 | Â | |
Proline (P) | CCT | 1.531 | Â |
CCC | 0.868 | Â | |
CCA | 1.136 | trnP-UGG | |
CCG | 0.592 | Â | |
Proline percentage | 4.126 | Â | |
Threonine (T) | ACT | 1.989 | Â |
ACC | 0.927 | trnT- GGU | |
ACA | 1.516 | trnT-UGU | |
ACG | 0.618 | Â | |
Threonine percentage | 5.050 | Â | |
Alanine (A) | GCT | 2.316 | Â |
GCC | 0.871 | Â | |
GCA | 1.408 | trnA-UGC(×2) | |
GCG | 0.629 | Â | |
Alanine percentage | 5.225 | Â | |
Tyrosine (Y) | TAT | 2.979 | Â |
TAC | 0.771 | trnY-GUA | |
Tyrosine percentage | 3.750 | Â | |
Histidine (H) | CAT | 1.802 | Â |
CAC | 0.626 | trnH-GUG | |
Histidine percentage | 2.428 | Â | |
Glutamine (Q) | CAA | 2.685 | trnQ-UUG |
CAG | 0.771 | Â | |
Glutamine percentage | 3.456 | Â | |
Asparagine (N) | AAT | 3.657 | Â |
AAC | 1.225 | trnN-GUU(×2) | |
Asparagine percentage | 4.882 | Â | |
Lysine (K) | AAA | 4.164 | trnK-UUU |
AAG | 1.322 | Â | |
Lysine percentage | 5.486 | Â | |
Aspartic acid (D) | GAT | 3.285 | Â |
GAC | 0.782 | trnD-GUC | |
Aspartic acid percentage | 4.067 | Â | |
Glutamic acid (E) | GAA | 3.959 | trnE-UUC |
GAG | 1.311 | Â | |
Glutamic acid percentage | 5.270 | Â | |
Cysteine (C) | TGT | 0.842 | Â |
TGC | 0.276 | trnC-GCA | |
Cysteine percentage | 1.117 | Â | |
Tryptophan (W) | TGG | 1.713 | trnW-CCA |
Tryptophan percentage | 1.713 | Â | |
Arginine (R) | CGT | 1.289 | trnR-ACG(×2) |
CGC | 0.432 | Â | |
CGA | 1.389 | Â | |
CGG | 0.447 | Â | |
AGA | 1.870 | trnR-UCU | |
AGG | 0.652 | Â | |
Arginine percentage | 6.078 | Â | |
Glycine (G) | GGT | 2.175 | Â |
GGC | 0.704 | trnG-GCC | |
GGA | 2.659 | trnG-UCC | |
GGG | 1.277 | Â | |
Glycine percentage | 6.815 | Â | |
Stop codon | TAA | 0.197 | Â |
Stop codon | TAG | 0.071 | Â |
Stop codon | TGA | 0.063 | Â |