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Table 2 List of genes in V. harmandiana chloroplast genome

From: Revisiting chloroplast genomic landscape and annotation towards comparative chloroplast genomes of Rhamnaceae

Function

Gene list

ATP-dependent protease proteolytic subunit

clpP1*

ATP synthase

atpA, atpB, atpE, atpF*, atpH, atpI

Cytochrome b/f complex

petA, petB*, petD*, petG, petL, petN

Cytochrome complex assembly

ccsA

Envelope membrane protein

cemA

Hypothetical chloroplast reading frames

ycf1(× 2), ycf2(× 2), ycf15(× 2)*

Maturase

matK

NADH dehydrogenase

ndhA*, ndhB(×2)*, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK

Photosystem I

psaA, psaB, psaC, psaI, psaJ, ycf3*, ycf4

Photosystem II

psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ

RubisCO large subunit

rbcL

Translational initiation factor

infA

Subunit of acetyl-CoA-carboxylase

accD

Large subunit of ribosomal proteins (LSU)

rpl14, rpl16*, rpl2(×2)*, rpl20, rpl22, rpl23(× 2), rpl32, rpl33, rpl36

Small subunit of ribosomal proteins (SSU)

rps2, rps3, rps4, rps7(×2), rps8, rps11, rps12(× 2, trans-spliced)*, rps14, rps15, rps16*, rps18, rps19 (× 2)

RNA polymerase

rpoA, rpoB, rpoC1*, rpoC2

Ribosomal RNAs (rRNA)

rrn4.5(×2), rrn5(× 2), rrn16(× 2), rrn23(× 2)*

Transfer RNAs (tRNA)

trnA-UGC(× 2)*, trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnfM-CAU, trnG-GCC, trnG-UCC*, trnH-GUG, trnI-CAU(× 2), trnI-GAU(× 2)*, trnK-UUU*, trnL-CAA(× 2), trnL-UAA*, trnL-UAG, trnM-CAU, trnN-GUU(× 2), trnP-UGG, trnQ-UUG, trnR-ACG(× 2), trnR-UCU, trnS-GCU, trnS-GGA, trnS-UGA, trnT-GGU, trnT-UGU, trnV-GAC(× 2), trnV-UAC*, trnW-CCA, trnY-GUA

  1. * Genes containing introns (s)
  2. (× 2) indicates a gene with an inverted repeat