Fig. 9

Region D6 on chromosome 7 related to RHD in ind A Chromosome-wide Manhattan plots of HDRA SNPs (left) and all RICE-RP SNPs in a chromosome-wide scan (right). The grey region indicates the genomic region. B Comparison of the RHD phenotype between ind lines carrying the alternate and reference allele at the MS-SNP. Significance is indicated by a t-test. C Magnification of the RICE-RP chromosome-wide Manhattan plot of the genomic region. Genes are overlaid on this plot and colored as follows. Orange genes are not expressed in root hairs or root-hair forming cells according to Huang et al. [69]. Below, haplotypes 1–5 are displayed with blue representing the reference identity and yellow, alternate, across this region. D Phenotypes of the haplotypes with significance indicated as a BH-adjusted, Kruskal-Wallace test with a Dunn posthoc test