Table 1 Upregulated differentially expressed genes in regions of interest in resistant and susceptible cowpea
Chromosome | Chromosome location | LocusName | Arabidopsis ID | Rice ID | General description | Cowpea line | Contrast | LFC |
|---|---|---|---|---|---|---|---|---|
Vu02 | 24,041,975–24,044,215 | Vigun02g086000 | NA | LOC_Os07g30330 | cytokinin-O-glucosyltransferase 2, putative, expressed | Resistant | Baseline resistance | 0.71 |
Vu02 | 24,527,133–24,529,115 | Vigun02g090300 | AT5G46790 | LOC_Os10g42280 | cyclase/dehydrase family protein, putative, expressed/REGULATORY COMPONENTS OF ABA RECEPTOR 12 | Resistant | Baseline resistance | 0.74 |
Vu02 | 24,718,128–24,719,022 | Vigun02g092000 | AT4G17920 | NA | ARABIDOPSIS TÃ3XICOS EN LEVADURA 29, RING/U-box superfamily protein | Resistant | Baseline resistance | 3.60 |
Vu02 | 24,893,932–24,895,648 | Vigun02g093900 | AT1G32260 | LOC_Os02g03560 | expressed protein/envelope glycoprotein | Resistant | Baseline resistance | 0.65 |
Vu02 | 25,427,691–25,430,592 | Vigun02g099000 | AT1G32100 | LOC_Os12g16410 | isoflavone reductase, putative, expressed/PINORESINOL REDUCTASE 1 | Resistant | Baseline resistance | 1.63 |
Vu02 | 25,434,966–25,437,102 | Vigun02g099100 | AT1G32100 | LOC_Os12g16410 | isoflavone reductase, putative, expressed/PINORESINOL REDUCTASE 1 | Resistant | Baseline resistance | 3.04 |
Vu02 | 25,539,416–25,544,157 | Vigun02g100400 | NA | LOC_Os05g31530 | disease resistance protein RGA4, putative, expressed | Resistant | Baseline resistance | 3.54 |
Vu02 | 25,555,264–25,560,603 | Vigun02g100600 | NA | LOC_Os05g31530 | disease resistance protein RGA4, putative, expressed | Resistant | Baseline resistance | 6.62 |
Vu02 | 25,566,413–25,573,986 | Vigun02g100700 | NA | LOC_Os05g31530 | disease resistance protein RGA4, putative, expressed | Resistant | Baseline resistance | 9.10 |
Vu02 | 25,601,805–25,609,187 | Vigun02g101300 | NA | LOC_Os05g31530 | disease resistance protein RGA4, putative, expressed | Resistant | Baseline resistance | 1.32 |
Vu02 | 25,636,494–25,641,136 | Vigun02g101600 | NA | LOC_Os05g31530 | disease resistance protein RGA4, putative, expressed | Resistant | Baseline resistance | 1.31 |
Vu02 | 25,647,631–25,651,399 | Vigun02g101800 | AT5G45400 | LOC_Os05g02040 | RPA1C—Putative single-stranded DNA binding complex subunit 1, expressed/Replication protein A 70 kDa DNA-binding subunit C | Resistant | Baseline resistance | 0.64 |
Vu02 | 25,717,359–25,721,986 | Vigun02g102400 | NA | LOC_Os05g31530 | disease resistance protein RGA4, putative, expressed | Resistant | Baseline resistance | 3.82 |
Vu02 | 25,733,262–25,737,804 | Vigun02g102500 | NA | LOC_Os05g31530 | disease resistance protein RGA4, putative, expressed | Resistant | Baseline resistance | 1.19 |
Vu02 | 25,744,177–25,748,760 | Vigun02g102600 | NA | LOC_Os05g31530 | disease resistance protein RGA4, putative, expressed | Resistant | Baseline resistance | 3.07 |
Vu02 | 25,866,019–25,878,677 | Vigun02g104200 | AT3G23640 | LOC_Os07g23880 | glycosyl hydrolase, family 31, putative, expressed/HETEROGLYCAN GLUCOSIDASE 1 | Resistant | AphidResD6 | 0.73 |
Vu02 | 25,995,838–26,000,843 | Vigun02g105800 | AT5G45275 | LOC_Os11g01590 | nodulin, putative, expressed/Major facilitator superfamily protein, solute transport | Resistant | Baseline resistance | 0.63 |
Vu02 | 26,005,896–26,009,931 | Vigun02g105900 | AT3G47570 | LOC_Os01g05980 | receptor kinase, putative, expressed/Leucine-rich repeat protein kinase family protein | Resistant | Baseline resistance | 1.43 |
Vu02 | 26,031,026–26,037,601 | Vigun02g106300 | AT4G19420 | LOC_Os02g47400 | pectinacetylesterase domain containing protein, expressed/PECTIN ACETYLESTERASE 8 | Resistant | Baseline resistance | 1.17 |
Vu02 | 26,088,276–26,093,541 | Vigun02g107000 | AT1G31650 | LOC_Os02g47420 | ATROPGEF7/ROPGEF7, putative, expressed/ROP (RHO OF PLANTS) GUANINE NUCLEOTIDE EXCHANGE FACTOR 14 | Resistant | AphidResD6 | 0.83 |
Vu02 | 26,158,748–26,165,517 | Vigun02g107600 | AT4G19380 | NA | Long-chain fatty alcohol dehydrogenase family protein | Resistant | AphidResD6 | 0.75 |
Vu02 | 26,371,444–26,373,970 | Vigun02g109800 | AT4G19170 | LOC_Os02g47510 | 9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed/CAROTENOID CLEAVAGE DIOXYGENASE 4 | Resistant | Baseline resistance | 0.61 |
Vu02 | 26,389,324–26,394,122 | Vigun02g110100 | AT3G45890 | LOC_Os04g22360 | DUF647 domain containing protein, putative, expressed/Ribonuclease P protein subunit P38-like protein | Resistant | AphidResD6 | 0.64 |
Vu02 | 26,414,667–26,416,541 | Vigun02g110300 | AT1G14130 | LOC_Os04g39980 | gibberellin 20 oxidase 2, putative, expressed/DIOXYGENASE FOR AUXIN OXIDATION 1 | Resistant | Baseline resistance | 1.61 |
Vu05 | 4,416,033–4,419,347 | Vigun05g051600 | AT5G48370 | LOC_Os09g34190 | acyl-coenzyme A thioesterase 10, mitochondrial precursor, putative, expressed/Thioesterase/thiol ester dehydrase-isomerase superfamily protein | Resistant | Baseline resistance | 1.09 |
Vu05 | 4,505,968–4,507,948 | Vigun05g052700 | AT3G60200 | LOC_Os02g46420 | transposon protein, putative, unclassified, expressed/Uncharacterized protein | Resistant | AphidResD6 | 1.65 |
Vu05 | 4,577,021–4,580,973 | Vigun05g053400 | AT3G03305 | LOC_Os01g66920 | Ser/Thr protein phosphatase family protein, putative, expressed/Calcineurin-like metallo-phosphoesterase superfamily protein | Resistant | AphidResD6 | 0.73 |
Vu02 | 24,637,099–24,637,783 | Vigun02g091400 | AT1G32690 | LOC_Os02g46620 | expressed protein/DUF740 family protein | Susceptible | AphidSuscD6 | 0.72 |
Vu02 | 24,707,273–24,709,788 | Vigun02g091900 | AT5G17600 | LOC_Os04g50100 | RING-H2 finger protein ATL5G, putative, expressed/RING/U-box superfamily protein | Susceptible | AphidSuscD6 | 3.11 |
Vu02 | 25,324,008–25,326,837 | Vigun02g097700 | AT3G07040 | LOC_Os08g32880 | disease resistance protein RPM1, putative, expressed/NB-ARC domain-containing disease resistance protein,RPM1 | Susceptible | AphidSuscD6 | 1.20 |
Vu02 | 26,773,059–26,776,235 | Vigun02g114000 | NA | NA | NA | Susceptible | AphidSuscD6 | 3.71 |
Vu02 | 25,779,331–25,781,605 | Vigun02g103100 | AT3G49010 | LOC_Os06g02510 | ribosomal protein L13, putative, expressed/60S ribosomal protein L13 | Susceptible | AphidSuscD1 | 0.88 |
Vu02 | 26,077,542–26,082,129 | Vigun02g106900 | NA | NA | NA | Susceptible | AphidSuscD1 | 3.11 |
Vu05 | 4,141,516–4,146,610 | Vigun05g048200 | AT4G16830 | LOC_Os01g52390 | plasminogen activator inhibitor 1 RNA-binding protein, putative, expressed/Hyaluronan / mRNA binding family | Susceptible | AphidSuscD1 | 0.70 |