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Table 3 Marker-trait association for chlorophyll a, chlorophyll b, starch, amylose, total protein and total soluble sugars in rice landraces present in the panel population detected by both the models of GLM and MLM analyses at p < 0.01

From: Association mapping for protein, total soluble sugars, starch, amylose and chlorophyll content in rice

Sl. No.

Traits

Markers

Chr#

Positions

(cM)

GLM

MLM

Marker_F

Marker_p

q value

Marker_r2

Marker_F

Marker_p

q value

Marker_r2

1

Chl. a

RM1347

2

82

12.06469

7.23E-04

0.00461

0.08366

8.85234

0.00356

0.00953

0.07251

2

Chl. a

RM405

5

109

18.22659

4.03E-05

0.00121

0.12059

7.46088

0.00729

0.00998

0.06111

3

Chl. a

RM3231

8

363

16.6411

8.32E-05

0.00163

0.11142

11.98915

7.50E-04

0.00488

0.0982

4

Chl. b

RM440

5

67

11.55526

9.27E-04

0.00493

0.07842

7.76369

0.00623

0.00953

0.0628

5

Chl. b

RM5436

7

136

7.80936

0.00608

0.00760

0.0546

6.86045

0.00999

0.00999

0.05549

6

Chl. b

RM3231

8

363

15.11793

1.69E-04

0.00169

0.09981

9.27211

0.00288

0.00953

0.075

7

Starch

RM3701

11

48

9.07463

0.00318

0.00712

0.06686

7.79603

0.00613

0.00953

0.06645

8

Starch

RM20377

6

212

10.02303

0.00198

0.00660

0.07329

8.32763

0.00466

0.00953

0.07099

9

Starch

RM6374

2

249

11.93771

7.69E-04

0.00461

0.08598

7.03173

0.00913

0.00999

0.05994

10

Amylose

RM3701

11

48

13.21964

4.14E-04

0.00355

0.09824

13.32049

3.95E-04

0.00426

0.11376

11

Amylose

RM315

1

92

7.41586

0.00746

0.00845

0.0577

8.42245

0.00444

0.00953

0.07193

12

Amylose

RM167

11

123

10.03053

0.00197

0.00660

0.07642

9.27197

0.00288

0.00953

0.07918

13

Amylose

RM6091

11

304

16.06201

1.09E-04

0.00163

0.11679

12.86845

4.91E-04

0.00426

0.1099

14

TP

RM566

8

234

8.23343

0.00489

0.00716

0.05289

7.10636

0.00878

0.00999

0.05832

15

TP

RM220

1

240

10.52602

0.00154

0.00578

0.06639

7.08199

0.00889

0.00999

0.05812

16

TP

RM5638

1

282

10.91588

0.00127

0.00508

0.06864

8.73341

0.00378

0.00953

0.07168

17

TP

RM253

6

355

9.72444

0.00229

0.00712

0.06172

7.99151

0.00554

0.00953

0.06559

18

TSS

RM247

12

23

8.46122

0.00435

0.00712

0.06682

7.12111

0.00871

0.00999

0.06081

19

TSS

RM337

8

27

7.46984

0.00726

0.00845

0.05946

8.09955

0.00524

0.00953

0.06916

20

TSS

RM248

7

157

24.15956

2.94E-06

0.00018

0.16942

14.13975

2.67E-04

0.00426

0.12074

21

TSS

RM566

8

236

8.82874

0.00361

0.00712

0.06952

7.78093

0.00617

0.00953

0.06644

  1. Chl. a Chlorophyll a content, Chl. b Chlorophyll b content, Starch Starch content, Amylose Amylose content, TP Total protein content, TSS Total soluble sugars content