Table 5 Homologous genes of plant grain weight/size-related genes in the physical intervals of the stable major QTL clusters of qClu-1-3 and qClu-1-5
From: QTL mapping and candidate gene analysis for yield and grain weight/size in Tartary buckwheat
QTL cluster | Homologues of grain weight/size related genes of Tartary buckwheat | Plant grain weight/size genes | Protein category | Accession number |
|---|---|---|---|---|
G-protein signalling | ||||
 qClu-1-3 | FtPinG0002488900.01 | AGB1 | Gβ subunit | AT4G34460.4 |
 qClu-1-3 | FtPinG0002472200.01 | AT4G34460.2 | ||
 qClu-1-3 | FtPinG0002450600.01 | |||
Phytohormone signalling and homeostasis | ||||
 qClu-1-3 | FtPinG0002437500.01 | AHKs | Histidine kinases; cytokinin receptors | AT1G27320.1 |
 qClu-1-3 | FtPinG0002474100.01 | AT2G01830.2 | ||
 qClu-1-3 | FtPinG0002452300.01 | AT2G01830.3 | ||
 qClu-1-3 | FtPinG0002469700.01 | ARF2/MNT | Auxin response factor | AT5G62000.3 |
 qClu-1-3 | FtPinG0001423200.01 | BRI1 | LRR-RLK; brassinosteroid receptor | AT4G39400.1 |
 qClu-1-3 | FtPinG0002492200.01 | |||
 qClu-1-3 | FtPinG0003208300.01 | |||
 qClu-1-5 | FtPinG0001016500.01 | |||
 qClu-1-5 | FtPinG0001017200.01 | |||
 qClu-1-5 | FtPinG0001017300.01 | |||
 qClu-1-5 | FtPinG0001017500.01 | |||
 qClu-1-5 | FtPinG0001026100.01 | |||
 qClu-1-3 | FtPinG0003206400.01 | D61/OsBRI1 | Os01t0718300-02 | |
 qClu-1-5 | FtPinG0001023100.01 | |||
 qClu-1-3 | FtPinG0002490200.01 | DASH | Endosperm-specific DOF transcription factor | Medtr2g014060 |
 qClu-1-3 | FtPinG0002440300.01 | GSE5/GW5/qSW5 | Calmodulin-binding protein | Os05t0187500-01 |
 qClu-1-3 | FtPinG0002492500.01 | GSK2 | SHAGGY-likekinase; regulator of brassinosteroid signaling kinase | Os05g020750 |
 qClu-1-3 | FtPinG0002493000.01 | IKU2 | LRR receptor kinase | AT3G19700.1 |
 qClu-1-3 | FtPinG0002491700.01 | |||
 qClu-1-3 | FtPinG0002451600.01 | |||
 qClu-1-5 | FtPinG0001017700.01 | |||
 qClu-1-5 | FtPinG0001023600.01 | |||
 qClu-1-5 | FtPinG0001025300.01 | |||
 qClu-1-5 | FtPinG0001010400.01 | PP2C-1 | Phosphatase 2C-1 | Glyma17g33690 |
 qClu-1-5 | FtPinG0001027100.01 | qGL3/GL3.1/OsPPKL1 | Protein phosphatase kelch family serine/threonine phosphatase | Os03t0646900-01 |
 qClu-1-3 | FtPinG0002458000.01 | TGW6 | IAA-glucosehydrolase | Os06t0623700-01 |
 qClu-1-3 | FtPinG0002461400.01 | ZmGS5 | Putative serine carboxypeptidase | GRMZM2G123815 |
Mitogen-activated protein kinase signalling pathway | ||||
 qClu-1-3 | FtPinG0002449100.01 | LARGE8/OsMKP1 | Mitogen-activated protein kinase phosphatase | Os05t0115800-01 |
 qClu-1-5 | FtPinG0001018400.01 | MKK4 | Mitogen-activated protein kinase kinase | AT1G51660.1 |
 qClu-1-3 | FtPinG0002471900.01 | OsMAPK6 | Mitogen-activated protein kinase | Os06t0154500-01 |
 qClu-1-5 | FtPinG0001026900.01 | |||
 qClu-1-3 | FtPinG0002491900.01 | SMG2/OsMKKK10 | Mitogen-activated protein kinase kinase kinase | Os04t0559800-01 |
 qClu-1-3 | FtPinG0002491100.01 | |||
 qClu-1-3 | FtPinG0002483600.01 | |||
 qClu-1-3 | FtPinG0002464900.01 | |||
 qClu-1-3 | FtPinG0002456200.01 | |||
 qClu-1-5 | FtPinG0001016300.01 | |||
 qClu-1-5 | FtPinG0001019400.01 | |||
 qClu-1-5 | FtPinG0001025500.01 | |||
The ubiquitin–proteasome pathway | ||||
 qClu-1-3 | FtPinG0002435600.01 | RPT2A | 26S proteasome regulatory particle AAA-ATPase | AT4G29040.1 |
 qClu-1-3 | FtPinG0002435400.01 | |||
Transcriptional regulators | ||||
 qClu-1-5 | FtPinG0001029500.01 | ABI5 | bZIP transcription factor | AT2G36270.1 |
 qClu-1-3 | FtPinG0001427400.01 | ANT | AP2-like family transcription factor | AT4G37750.1 |
 qClu-1-5 | FtPinG0001028600.01 | |||
 qClu-1-3 | FtPinG0002470000.01 | Awn-1 (An-1) | Basic helix-loop-helix transcription factor | Os04t0350700-01 |
 qClu-1-5 | FtPinG0001027800.01 | |||
 qClu-1-5 | FtPinG0001033800.01 | |||
 qClu-1-5 | FtPinG0001029100.01 | GS2/GL2/GLW2/PT2 | OsGRF4 | Os02g0701300 |
 qClu-1-3 | FtPinG0001428200.01 | LP1 | WRKY family transcription factor | Seita.2G369500.1.p |
 qClu-1-3 | FtPinG0002493300.01 | |||
 qClu-1-3 | FtPinG0002461800.01 | MADS1 | MADS-domain transcription factor | Os03t0215400-01 |
 qClu-1-3 | FtPinG0002495300.01 | |||
Other regulators | ||||
 qClu-1-3 | FtPinG0002466600.01 | ABA2 | Short-chain dehydrogenase/reductase | AT1G52340.1 |
 qClu-1-3 | FtPinG0002473300.01 | AGPase | ADP-glucose pyrophosphorylase family protein | AT1G74910.2 |
 qClu-1-3 | FtPinG0002490800.01 | CYP78A9 | Cytochrome P450 | AT3G61880.1 |
 qClu-1-3 | FtPinG0002490600.01 | AT3G61880.2 | ||