Phylogeny and adaptive evolution of subgenus Rhizirideum (Amaryllidaceae, Allium) based on plastid genomes

BMC Plant Biology

Table 2 Summary of genes interrupted by introns in Rhizirideum plastomes

No.	Gene	Region	Exon I (bp)	Intron I (bp)	Exon II (bp)	Intron II (bp)	Exon III (bp)
1	atpF	LSC	144⁺	789	411⁺
2	clpP	LSC	69⁺	1094	294⁺	879	252⁺
3	ndhA	SSC	558⁺	1128	540⁺
4	ndhB	IRb	777⁺	701	756⁺
5	ndhB	IRa	777⁻	701	756⁻
6	petB	LSC	6⁻	920	642⁻
7	petD	LSC	8⁻	746	514⁻
8	rpl16	LSC	9⁺	1042	399⁺
9	rpl2	IRb	387⁺	659	432⁺
10	rpl2	IRa	387⁻	659	432⁻
11	rpoC1	LSC	432⁺	759	1623⁺
12	rps12a	LSC, IRa	114⁺	69,984	232⁻	542	26⁻
13	rps12b	LSC,IRb	114⁺	28,994	232⁺	542	26⁺
14	rps16	LSC	40⁺	846	197⁺
15	trnA-UGC	IRb	38⁻	815	35⁺
16	trnA-UGC	IRa	38⁺	815	35⁺
17	trnG-TCC	LSC	23⁻	692	49⁻
18	trnI-GAU	IRb	37⁻	934	35⁻
19	trnI-GAU	IRa	37⁺	934	35⁺
20	trnL-UAA	LSC	35⁻	305	50⁻
21	trnV-UAC	LSC	37⁺	598	37⁺
22	ycf3	LSC	129⁺	722	228⁺	738
23	ycf68	IRb	42⁻	31	411⁻		153⁺
24	ycf68	IRa	42⁺	31	411⁺
25	trnK-UUU	LSC	37⁺	2564	35⁺

ISSN: 1471-2229