Table 1 Identification of 70 candidate genes located in the nine core MQTL intervals
MQTL | Gene ID | Gene Position | Description | Orthology |
|---|---|---|---|---|
MQTL1D.1 | TraesCS1D02G004900 | 2,218,794–2,230,403 | Paired amphipathic helix protein Sin3 | NA |
|  | TraesCS1D02G005200 | 2,468,742–2,472,416 | Glycosyltransferase-like KOBITO 1 | Os01g13200 |
|  | TraesCS1D02G007800 | 3,961,444–3,964,988 | Ankyrin repeat family protein | Os01g01960 |
|  | TraesCS1D02G007900 | 3,968,895–3,969,443 | MICOS complex subunit Mic25 | Os05g01300 |
MQTL2A.2 | TraesCS2A02G083000 | 38,218,064–38,220,520 | Elongation factor 1-alpha | Os03g08010 |
|  | TraesCS2A02G083300 | 38,304,986–38,306,906 | Elongation factor 1-alpha | Os03g08010 |
|  | TraesCS2A02G086400 | 39,704,402–39,709,256 | AAA + ATPase domain | OsRpt3; OSRPT2B |
|  | TraesCS2A02G087000 | 40,541,031–40,547,241 | Adenosine/AMP deaminase domain | Os07g49270 |
|  | TraesCS2A02G088300 | 41,652,179–41,655,428 | NmrA-like domain | Os12g16410 |
|  | TraesCS2A02G089300 | 42,470,945–42,476,145 | Heat shock transcription factor | OsHsfA2b; OsHSF5 |
|  | TraesCS2A02G090000 | 43,133,651–43,137,076 | AAA + ATPase domain | OSRPT2B |
|  | TraesCS2A02G092200 | 45,085,317–45,085,622 | Wound-induced protein WI12 | Os03g18770 |
|  | TraesCS2A02G075800 | 33,696,041–33,701,785 | DNA binding | Os04g19684 |
|  | TraesCS2A02G076700LC | 38,490,262–38,490,831 | Pol polyprotein | Os04g20220 |
|  | TraesCS2A02G076900 | 34,517,930–34,520,662 | ER membrane protein complex subunit 8/9-like protein | Os04g20230 |
|  | TraesCS2A02G079500 | 36,047,811–36,053,052 | Oxoglutarate dehydrogenase (succinyl-transferring) activity | Os07g49520 |
|  | TraesCS2A02G080000 | 36,138,685–36,141,909 | LPS-induced tumor necrosis factor alpha factor | Os02g31100 |
|  | TraesCS2A02G082100 | 37,084,649–37,088,462 | Peroxidase activity | OsAPX1; OsAPXa |
|  | TraesCS2A02G075900 | 33,712,839–33,714,236 | Leucine-rich repeat 2 | OsFbox194 |
MQTL3D.1 | TraesCS3D02G024500 | 8,285,414–8,287,617 | Glyceraldehyde-3-phosphate dehydrogenase | Os01g02930 |
|  | TraesCS3D02G024700 | 8,336,528–8,341,354 | Cytochrome P450 | OsCYP709C5 |
|  | TraesCS3D02G026400 | 8,971,472–8,975,036 | Fructose-bisphosphate aldolase class-I | Os11g07020 |
|  | TraesCS3D02G031900 | 11,747,403–11,752,024 | WD40 repeat | OsAIP1 |
|  | TraesCS3D02G032000 | 11,755,792–11,762,962 | Ubiquitin-conjugating enzyme E2 | OsUBC34 |
MQTL4A.2 | TraesCS4A02G472900LC | 605,125,402–605,129,635 | Putative S-adenosyl-L-methionine-dependent methyltransferase | Os01g62800 |
|  | TraesCS4A02G473000LC | 605,128,287–605,128,517 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | NA |
|  | TraesCS4A02G315500 | 605,656,378–605,659,792 | Chaperonin Cpn60 | Os12g17910 |
|  | TraesCS4A02G310700 | 603,377,077–603,380,232 | Zinc finger C2H2-type | Os09g39660 |
MQTL4A.6 | TraesCS4A02G442900 | 710,742,945–710,744,427 | Peroxisomal biogenesis factor 11 | Os06g03660 |
|  | TraesCS4A02G445300 | 713,352,055–713,352,438 | Ozone-responsive stress-related protein | Os06g02420 |
MQTL6B.5 | TraesCS6B02G772700LC | 701,661,949–701,662,457 | ATP-dependent 6-phosphofructokinase 1 | NA |
|  | TraesCS6B02G432600 | 701,871,210–701,874,404 | Thiolase | OsI57 |
|  | TraesCS6B02G432700 | 701,886,743–701,890,627 | Ribosomal protein L13 | Os08g06474 |
|  | TraesCS6B02G432900 | 701,977,549–701,982,043 | Aldo/keto reductase family | Os02g57240 |
|  | TraesCS6B02G433800 | 702,562,152–702,565,516 | DHHC palmitoyltransferase | OsPAT15 |
|  | TraesCS6B02G434700 | 703,153,107–703,155,841 | OTU-like cysteine protease | Os02g57410 |
|  | TraesCS6B02G436400 | 704,038,894–704,042,474 | Serine-threonine protein phosphatase N-terminal domain | OsPP41 |
|  | TraesCS6B02G439300 | 704,879,300–704,881,854 | PBS lyase HEAT-like repeat | Os12g43100 |
|  | TraesCS6B02G439400 | 704,882,414–704,885,861 | Target SNARE coiled-coil homology domain | Os02g57510 |
|  | TraesCS6B02G783000LC | 704,944,589–704,949,129 | ATP binding | NA |
|  | TraesCS6B02G439800 | 705,158,924–705,162,882 | RING/U-box superfamily protein | Os11g18947 |
|  | TraesCS6B02G440000 | 705,282,693–705,285,851 | B3 DNA binding domain | Os03g42230 |
|  | TraesCS6B02G440200 | 705,377,945–705,384,852 | Metabolic process | Os06g19960 |
|  | TraesCS6B02G440500 | 705,497,185–705,500,263 | Fibrillarin | Os02g57590 |
MQTL7B.1 | TraesCS7B02G002900 | 1,203,205–1,208,405 | COP1-interacting-like protein | DEP2; EP2; SRS1 |
|  | TraesCS7B02G005700 | 3,142,605–3,150,879 | THIF-type NAD/FAD binding fold | Os02g30310 |
|  | TraesCS7B02G005800LC | 2,014,362–2,018,322 | NAC domain | Os01g18070 |
|  | TraesCS7B02G003000 | 1,254,814–1,262,214 | COP1-interacting-like protein | DEP2; EP2; SRS1 |
|  | TraesCS7B02G003200 | 1,277,537–1,282,562 | PB1 domain | Os07g25680 |
MQTL7B.3 | TraesCS7B02G366700 | 630,552,409–630,552,871 | Ubiquitin domain | Os06g46770 |
|  | TraesCS7B02G619400LC | 632,490,144–632,492,343 | GTPase activity | NA |
|  | TraesCS7B02G377800 | 642,274,924–642,277,145 | Ribosomal protein S8 | Os02g15610 |
|  | TraesCS7B02G636000LC | 644,027,912–644,028,247 | Myosin-like protein XIG | NA |
|  | TraesCS7B02G623100LC | 634,562,940–634,564,127 | F-box protein At5g41490 | NA |
|  | TraesCS7B02G370800 | 636,625,334–636,627,607 | Ribosomal protein S13 | Os03g58050 |
|  | TraesCS7B02G371900 | 637,769,054–637,774,747 | RNA recognition motif domain | Os06g45910 |
|  | TraesCS7B02G372500 | 638,129,949–638,134,271 | SANT/Myb domain | Os06g01670 |
|  | TraesCS7B02G372700 | 638,509,625–638,515,329 | Conserved oligomeric Golgi complex subunit 7 | Os06g45830 |
|  | TraesCS7B02G373000 | 638,882,526–638,885,183 | Peptidase M41 | OsFtsH2 |
MQTL7D.2 | TraesCS7D02G148900 | 96,756,606–96,777,587 | Chromatin-remodeling factor CHD3 | CHR702 |
|  | TraesCS7D02G149000 | 97,615,140–97,617,186 | SWEET sugar transporter | OsSWEET15 |
|  | TraesCS7D02G149300 | 98,292,586–98,293,620 | Rtf2 RING-finger | Os06g08490 |
|  | TraesCS7D02G149500 | 98,408,253–98,411,417 | DNA-directed RNA polymerase subunit beta | DPL2 |
|  | TraesCS7D02G149800 | 98,637,892–98,644,179 | Ubiquitin carboxyl-terminal hydrolase | Os06g08530 |
|  | TraesCS7D02G150300 | 99,617,003–99,618,245 | Thioredoxin-like fold | Os07g09310 |
|  | TraesCS7D02G150900 | 100,280,693–100,281,019 | Proteolipid membrane potential modulator | OsRCI2-8 |
|  | TraesCS7D02G152400 | 101,084,476–101,087,850 | Glutathione peroxidase | OsGPX4 |
|  | TraesCS7D02G152800 | 101,395,597–101,400,935 | Serine-type carboxypeptidase activity | OsSCP1 |
|  | TraesCS7D02G153200 | 101,580,722–101,585,530 | ATP-dependent DNA helicase | Os06g08740 |
|  | TraesCS7D02G154500 | 102,537,242–102,539,785 | RNA-binding (RRM/RBD/RNP motifs) family protein | Os10g39510 |