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Table 4 A short-list of putative candidate genes related to Pro and H2O2 accumulation under drought stress and theSTI. The genes overlap with the significant markers or haplotype block regions

From: Pinpointing genomic loci for drought-induced proline and hydrogen peroxide accumulation in bread wheat under field conditions

Trait

Marker/Haplotype

Chr

Position (bp)

Candidate gene

Protein

Gene OntolGene Ontology

Pro_dro

AX-158569423

1A

8,248,738

TraesCS1A01G015300

Ras-like protein

GO:0005525 MF: GTP binding

BS00009970_51

4A

45,338,226

TraesCS4A01G053700

CaM_binding domain-containing protein

 

Pro_1A_Hap1

1A

7,835,834 to 8,239,960

TraesCS1A01G014400

Serine/threonine-protein kinase

GO:0004672 MF: protein kinase activity

   

TraesCS1A01G014500

Serine/threonine-protein kinase

GO:0004672 MF: protein kinase activity

   

TraesCS1A01G014900

Serine/threonine-protein kinase

GO:0004672 MF: protein kinase activity

   

TraesCS1A01G015000

Serine/threonine-protein kinase

GO:0004672 MF: protein kinase activity

Pro_1A_Hap2

1A

33,365,205 to 33,375,641

TraesCS1A01G051900

transmembrane protein

NA

Pro_1A_Hap3

1A

586,717,462 to 586,915,440

TraesCS1A01G051000

F-box protein

NA

   

TraesCS1A01G051100

F-box/LRR-repeat protein

NA

   

TraesCS1A01G051600

F-box family protein

GO:0005515 MF: protein binding

Pro_3B_Hap1

3B

18,820,910 to18822191

TraesCS3B01G039100

MYB transcription factor

GO:0003677 MF: DNA binding

   

TraesCS3B01G039200

NBS-LRR disease resistance protein

GO:0043531 MF: ADP binding

Pro_7B_Hap1

7B

144,074,930 to 144,705,984

TraesCS7B01G122600

Aquaporin

GO:0005215 MF: transporter activity

   

TraesCS7B01G122800

Receptor-like protein kinase

GO:0004672 MF: protein kinase activity

   

TraesCS7B01G122900

Zinc finger family protein

GO:0003676 MF: nucleic acid binding

Pro_6D_Hap1

6D

470,391,193 to 470,683,534

TraesCS6D01G401100

Pentatricopeptide repeat-containing protein

GO:0005515 MF: protein binding

Pro_4A_Hap1

4A

40,442,320 to 43,031,174

TraesCS4A01G049900

Protein kinase

GO:0004672 MF: protein kinase activity

   

TraesCS4A01G050000

Phosphatase 2C family protein

GO:0003824 MF: catalytic activity

   

TraesCS4A01G050100

Tetratricopeptide repeat protein 1

GO:0005515 MF: protein binding

   

TraesCS4A01G050400

Pentatricopeptide repeat-containing protein, putative

GO:0005515 MF: protein binding

   

TraesCS4A01G050500

Metal transporter

GO:0005215 MF: transporter activity

Pro_STI

AX-110412102

2A

775,936,337

TraesCS2A01G584400

WAT1-related protein

GO:0016020 CC: membrane

Ku_c1575_338

3B

726,481,592

TraesCS3B01G475800

Auxin response factor

GO:0003677 MF: DNA binding

AX-158550762

5A

451,456,903

TraesCS5A01G235300

Hexosyltransferase

GO:0016758

AX-158525047

5B

490,619,499

TraesCS5B01G307200

DNA polymerase delta subunit 4

GO:0006260 BP: DNA replication

GENE_3437_148

5B

489,280,672

TraesCS5B01G305100

PF02181: Formin Homology 2 Domain

G

Jagger_c3991_101

5B

488,820,722

TraesCS5B01G304800

cytochrome P450, family 702, subfamily A, polypeptide 6

NA

Excalibur_c9846_458

5B

505,482,207 to 506,269,971

TraesCS5B01G320600

Pentatricopeptide repeat-containing protein

GO:0005515 MF: protein binding

Pro_3B_Hap4

3B

 

TraesCS3B01G475800

Auxin response factor

GO:0003677 MF: DNA binding

   

TraesCS3B01G476500

F-box protein

NA

   

TraesCS3B01G476700

Auxin response factor

NA

   

TraesCS3B01G476800

Prefoldin subunit 5

NA

   

TraesCS3B01G476900

F-box protein family

GO:0005515 MF: protein binding

   

TraesCS3B01G477000

E3 ubiquitin protein ligase drip2

NA

Pro_4B_Hap1

4B

 

TraesCS4B01G292700

Transmembrane protein, putative

NA

   

TraesCS4B01G292900

AP2-like ethylene-responsive transcription factor

GO:0003677 MF: DNA binding

Pro_5A_Hap1

5A

 

TraesCS5A01G516800

Basic-leucine zipper (bZIP) transcription factor family protein

NA

Pro_5B_Hap1

5B

 

TraesCS5B01G320600

Pentatricopeptide repeat-containing protein

GO:0005515 MF: protein binding

Pro_5B_Hap2

5B

 

TraesCS5B01G321800

Uncharacterized protein

GO:0005524 MF: ATP binding

Pro_5B_Hap3

5B

 

TraesCS5B01G387400

F-box family protein

GO:0005515 MF: protein binding

H2O2_STI

HP_1B_Hap1

1B

 

TraesCS1B01G007800

TAF domain-containing protein

GO:0046982 MF: protein heterodimerization

AX-86183817

1B

614,452,475

TraesCS1B01G382000

Lys-63-specific deubiquitinase BRCC36

GO:0005515 MF: protein binding

AX-158596005

2A

751,004,758

TraesCS2A01G537100

Superoxide dismutase

GO:0004784 MF: superoxide dismutase activity

Excalibur_c9752_289

2B

760,950,856

TraesCS2B01G570500

phosphatidylinositol 4-kinase gamma-like protein

GO:0016301 MF: kinase activity

HP _2B_Hap1

2B

51,928,949 to 73,198,699

TraesCS2B01G090200

F-box family protein

GO:0005515 MF: protein binding

   

TraesCS2B01G091500

Cytochrome P450

GO:0005506 MF: iron ion binding

   

TraesCS2B01G566900

Serine/threonine-protein kinase

GO:0004672 MF: protein kinase activity

HP _2B_Hap2

2B

758,593,004 to 760,933,257

TraesCS2B01G567000

Serine/threonine-protein kinase

GO:0004672 MF: protein kinase activity

   

TraesCS2B01G567100

Serine/threonine-protein kinase

GO:0004674 MF: protein serine/threonine kinase activity

   

TraesCS2B01G567500

Serine/threonine-protein kinase

GO:0004672 MF: protein kinase activity

   

TraesCS2B01G567600

Superoxide dismutase

GO:0004784 MF: superoxide dismutase activity

   

TraesCS2B01G567700

Serine/threonine-protein kinase

GO:0004674 MF: protein serine/threonine kinase activity

   

TraesCS2B01G567800

Serine/threonine-protein kinase

GO:0004672 MF: protein kinase activity

   

TraesCS2B01G568000

Serine/threonine-protein kinase

GO:0004672 MF: protein kinase activity

   

TraesCS2B01G568500

Serine/threonine-protein kinase

GO:0004672 MF: protein kinase activity

   

TraesCS2B01G568600

Serine/threonine-protein kinase

GO:0004672 MF: protein kinase activity

HP _6D_Hap1

6D

3,119,406 to 3,141,405

TraesCS6D01G007800

receptor kinase 1

GO:0004672 MF: protein kinase activity

   

TraesCS6B01G138800

F-box plant-like protein, putative

NA

   

TraesCS6B01G138900

F-box plant-like protein, putative

NA

H2O2_dro

AX-158557366

2A

749,105,336

TraesCS2A01G533200

Flavin-containing monooxygenase

GO:0016491 MF: oxidoreductase activity

  1. Abbreviations: MF, molecular function; Pro_dro, Proline content under drought conditions; H2O2_dro, H2O2 content under drought conditions