Marker | Sequence | Trait | Ch. | Position (bp) | p-value | FDR | R2 (%) | Homolog gene ID in rice | Description |
---|---|---|---|---|---|---|---|---|---|
rs23576 | TGCAGCCCCCTCAAAGTCCAACAAAGGAAGCCTGTGTTCAAACATATCATCAGTCTTCACCCGAA | ELI | 4 | 3,555,377-3,562,902 | 0.000102795 | 0.934867761 | 5.42 | OsAGO4b Os04g0151800 | Argonaute and Dicer protein, PAZ domain containing protein |
rs57411 | TGCAGTATCTTCGAGGGCTATGTACCTCAAGGTATCATGCAGATGGTGTCCTCTTGGAGCATCT | SPAD | 1 | 26,923,017-26,924,486 | 0.00017542 | 0.997601354 | 10.88 | Os_F0640 Os01g0660700 | Protein of unknown function DUF295 family protein |
rs38145 | TGCAGCTCTTCAGTACTACGCACGAAGACATCTGGAAGGTGCTTTTCAAGTCCAACGAGACGTG | SFW | 3 | 11,449,370-11,450,605 | 0.000138462 | 0.934754317 | 8.86 | Os03g0317900 | Similar to Eukaryotic aspartyl protease family protein |
rs12892 | TGCAGCAATCATATTATCCAAAGGGCTCGAAAAGTGACCCGATGGTGTTGGCACATATTGCGGC | SDW | 1 | 2,713,300-2,717,425 | 0.000144389 | 0.991476107 | 10.81 | Os01g0150100 | Similar to Geranylgeranyltransferase type I beta subunit |
rs19020 | TGCAGCATATGTTACGACTTACGACTACAGCTATGGCGGCTTCTCAGCCTCCACCTCGCGCGAC | RWC | 3 | 31,048,351-31,055,017 | 0.000167852 | 0.897008387 | 8.89 | PAP2 Os03g0753100 | MADS-box transcription factor, Inflorescence and spikelet developmen |
rs2460 | TGCAGAATACAAGAAAACTTGGGTTGGACAGAATGCCCTTCCAACACCTCCAGGTCGAAGTTCC | RFW | 8 | 9,921,522-9,923,218 | 0.000174577 | 0.999283649 | 19.32 | OsCYP96B8 Os08g0262500 | Cytochrome P450 family protein |
rs43005 | TGCAGGAATGCTTAGGAGTCCTGGATTACGGGGTTCTCGGGGAGCTGCCCTATGTGTCATGGGC | RDW | 2 | 5,131,380-5,132,629 | 0.000323829 | 0.999773413 | 12.93 | Os02g0192300 | Zinc finger, RING/FYVE/PHD-type domain containing protein |
rs14133 | TGCAGCACCAGGTTTAGTAATGGCGCGTGAAGCGCCGATTAAGCACTGCCGAGATCGGAAGAGC | RV | 2 | 25,329,183-25,341,924 | 0.000155995 | 0.660997839 | 10.17 | Os02g0632500 | Arf GTPase activating protein family protein |
rs20420 | TGCAGCATTTTGCCACCGCGAGGGTCATAAAAGGACGATATGCCCAGAAAGAGGTGATGCACCG | SH | 4 | 18,458,075-18,458,875 | 0.000100427 | 0.5998512 | 22.73 | Os04g0377932 | Similar to Gonidia forming protein GlsA |
rs5991 | TGCAGAGCCCACCGCTGTGGAGGCGCAACCCGAAGGCACTAGCTTGTTTGACGAGAGTGCCCGA | RH | 1 | 3,924,401-3,926,323 | 0.000118389 | 0.410072448 | 8.12 | Os01g0176200 | UDP-glucuronosyl/UDP-glucosyltransferase family protein |
rs27832 | TGCAGCGAAACCATACGATGGATGAAAATAGTACATGATGTATCAAATGGAAACTATGCCACGA | Chl a | 3 | 3,260,107-3,270,386 | 0.00012644 | 0.922732948 | 6.15 | Os03g0161100 | Similar to Viral A-type inclusion protein repeat containing protein, expressed |
rs24738 | TGCAGCCGACCGATAGAATTGATCCAGCCATCACTCTAGGCAGCAAGGTTCTACATCTGTGTGC | Chl b | 2 | 35,091,247-35,099,291 | 0.000103314 | 0.945323776 | 6.03 | CYP97A4 Os02g0817900 | Cytochrome P450 family protein |
rs7710 | TGCAGATAGAACCTTGTATTTTGCTCACAAAAAAGAAGAAGATAGAACCTGGATTCTCCTTCTT | Total Chl | 1 | 2,226,409-2,229,526 | 0.000111059 | 0.969036099 | 6.32 | Os01g0141300 | Similar to vacuolar sorting protein 4b |
rs53598 | TGCAGGTCTGGTGAGTTTGTGCTGGTCATCAGTCATCGCTCGTGCAGACGATACGAGGCTCCTA | Car | 2 | 30,011,066-30,015,609 | 0.000127541 | 0.863340516 | 7.23 | Os02g0722700 | Similar to Nucleic acid binding protein |
rs59088 | TGCAGTCGGAGCATCCGATGAAAATCAAATAAATTTGTTTTAGCTTCATACATACTCCAAGCAA | protein | 3 | 23,989,148-23,997,520 | 0.000168358 | 0.999760957 | 5.22 | Os03g0628800 | Similar to H1flk (Fragment) |
rs14676 | TGCAGCACCTTCCGCCCAATCGCCACCGACTGCTCCTTCCGCCGCCGATTCCGCCGAGATCGGA | proline | 3 | 11,613,231-11,614,737 | 0.000173086 | 0.999106429 | 32.56 | OsFbox137 Os03g0321300 | Cyclin-like F-box domain containing protein |
rs3861 | TGCAGACCCCTTTCCAGAACAGCCTCCGCGAGGTGCTGGAGGATGAGGAGGGGGTGCCGAGATC | CAT | 8 | 23,648,009-23,651,073 | 0.000369888 | 0.995744042 | 6.33 | CycD4 Os08g0479300 | Cyclin, A/B/D/E domain containing protein |
rs9866 | TGCAGATTACATCAAGGAGGACACCCCCGCCGACGGGCTCGGTGATCTGCCCGCCCAGCCACCG | GPX | 10 | 94,937-97,746 | 0.000141706 | 0.999955014 | 5.85 | Os10g0101000 | Serine/threonine protein kinase domain containing protein |
rs9047 | TGCAGATGAGGCGGTGGACGATGCGGTCGATGCAGTCCTGGGCGTCGTGCACCAGGCCAAGCAT | MDA | 5 | 27,441,786-27,445,901 | 0.000315678 | 0.999277164 | 6.37 | Os05g0551900 | Similar to EMB1865 (embryo defective 1865); RNA binding |
rs63113 | TGCAGTTCCAAATTGCCCATAACAACGCATACACTCCTACACGAATATGTCTAGCTGTATCGGA | Na-s | 6 | 16,400,699-16,432,426 | 0.000170855 | 0.999948041 | 5.37 | OsOSC6 Os06g0483200 | Similar to cycloartenol synthase |
rs58688 | TGCAGTCCGTTTTTAATTTCTGGCCTGGATCAGTTTCTTCCTCTGGATGGCCACGCTTATTTGT | Na-r | 12 | 21,230,590-21,232,506 | 0.000146445 | 0.999834851 | 10.13 | DHQDT/SDH Os12g0534000 | Similar to Dehydroquinate dehydratase/shikimate:NADP oxidoreductase |
rs46450 | TGCAGGCAGTCATGTACCAGTACTACAACTCTCGCGGCCGTGGCATCTGAGCATTGGATCACGT | K-s | 6 | 28,699,601-28,706,417 | 0.000270262 | 0.999928028 | 7.98 | Os06g0688100 | Hypothetical conserved gene |
rs46450 | TGCAGGCAGTCATGTACCAGTACTACAACTCTCGCGGCCGTGGCATCTGAGCATTGGATCACGT | K-r | 6 | 28,699,601-28,706,417 | 0.000270262 | 0.999928028 | 7.98 | Os06g0688100 | Hypothetical conserved gene |
rs37461 | TGCAGCTCGGCCAGCTCCGCGAGCAGCGCCGCGTCGGCCGACGACTTGGACATGTCGCCGAGAT | K/Na-s | 10 | 22,294,896-22,297,645 | 0.000142161 | 0.566933932 | 5.62 | SAPK3 Os10g0564500 | Serine/threonine protein kinase, Hyperosmotic stress respons |
rs774 | TGCAGAAATAAATATCTTTGCCGCCCCGCATCATTGGAACCTAGTCTCAACCCGAGATCGGAAG | K/Na-r | 3 | 34,257,858-34,263,571 | 0.000149427 | 0.999795877 | 7.93 | OsSCAR3 Os03g0816900 | Conserved hypothetical protein |