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Fig. 4 | BMC Plant Biology

Fig. 4

From: Evolution of different rice ecotypes and genetic basis of flooding adaptability in Deepwater rice by GWAS

Fig. 4

Selective sweep of different rice ecotypes and GWAS analyses on deepwater rice. a, b Selective sweep regions identified by the greatest reduction of diversity (ROD) of DW and UP-XI, respectively. c. Genomic differentiation regions identified by the greatest relative divergence (FST) between DW and UP-XI populations. Dashed lines indicate the top 1% of the ROD or FST values, and red lines indicate known genes involving in the flooding or drought tolerance mentioned in the text. Red and blue gene names represent detected in DW and UP-XI. d. Manhattan plots obtained from GWAS for the deepwater rice. Dashed lines indicated the threshold for GWAS (−log(P) = 7). Red lines show known genes involving in the flooding mentioned in the text

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