Genome-wide association study for resistance in bread wheat (Triticum aestivum L.) to stripe rust (Puccinia striiformis f. sp. tritici) races in Argentina

Table 3 Significant markers associated with field-based resistance to stripe rust in the collection of bread wheat

Trait	Chr.^a	SNP marker	Position^b	Allele^c	P-value	MAF ^d	FDR-Adjusted P-values^e	R^2f
DS	3B	wsnp_Ku_c33335_42844594	71,871,162	A/G	2.26E-07	0.316	2.861 × 10^–03	13.40
DS	7A	wsnp_Ex_c20062_29096408	96,809,079	T/C	8.10E-08	0.197	2.052 × 10^–03	7.67
AUDPC	3B	CAP12_rep_c7064_56	43,970,547	T/C	1.47E-08	0.138	1.864 × 10^–04	8.15
	3B	wsnp_Ku_c33335_42844594	71,871,162	A/G	4.06E-08	0.316	3.428 × 10^–04	14.01
	7A	wsnp_Ex_c20062_29096408	96,809,079	T/C	5.81E-10	0.197	1.472 × 10^–05	7.79

^a Chr. Chromosome
^b Physical position of SNP (single-nucleotide polymorphism) markers in base pairs as per IWGSC Ref Seq v2.1
^c Favorable allele is underlined
^d MAF Minor allele frequency
^e FDR False discovery rate adjusted P-values
^f Percentage of phenotypic variation explained by the marker-trait association

ISSN: 1471-2229