Comparison of anther transcriptomes in response to cold stress at the reproductive stage between susceptible and resistant Japonica rice varieties

Table 3 Quality assessment of transcriptome data overview

Samples	Clean reads	Clean bases	Mapped Reads	Mapped Reads/Reference Genome (%)	GC Content (%)	%≥Q30
LJ25_0_1	21,609,792	7,980,503,202	36,434,612	84.30	55.53	92.43
LJ25_0_2	28,917,176	10,124,446,350	47,992,825	82.98	56.07	91.78
LJ25_0_3	30,826,689	9,235,905,684	51,148,445	82.96	55.56	91.98
LJ25_2_1	27,882,196	6,401,626,196	45,602,317	81.78	55.52	91.46
LJ25_2_2	27,757,905	10,975,096,620	45,293,095	81.59	54.52	91.74
LJ25_2_3	24,935,169	9,316,606,172	41,000,921	82.22	55.39	92.05
LJ25_4_1	30,249,660	9,115,767,834	49,312,142	81.51	55.28	91.94
LJ25_4_2	30,851,206	8,709,768,128	51,115,346	82.84	55.05	91.96
LJ25_4_3	34,697,837	7,971,386,384	56,124,178	80.88	55.67	91.3
LJ11_0_1	26,971,012	6,382,284,518	43,361,427	80.39	56.58	91.10
LJ11_0_2	34,230,674	8,551,868,430	55,243,173	80.69	56.40	91.52
LJ11_0_3	31,262,982	9,126,285,864	50,368,723	80.56	55.92	91.26
LJ11_2_1	21,610,740	8,250,744,030	34,915,829	80.78	54.77	91.39
LJ11_2_2	37,117,251	8,212,639,628	60,514,688	81.52	55.35	91.86
LJ11_2_3	31,497,458	7,351,457,562	50,799,160	80.64	55.02	91.29
LJ11_4_1	30,907,327	8,935,105,036	49,175,101	79.55	53.92	91.86
LJ11_4_2	29,528,812	9,108,001,686	48,432,689	82.01	53.98	91.92
LJ11_4_3	27,009,855	10,268,046,118	44,750,148	82.84	53.40	92.20

ISSN: 1471-2229