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Table 2 QTL for leaf-related traits in an F1 population. The phenotypic data was assessed for two years in two locations (CP and LF)

From: Combining QTL mapping and RNA-Seq Unravels candidate genes for Alfalfa (Medicago sativa L.) leaf development

Phenotype

Parent

QTL

Chr

Environment

Position

LSI (cM)

Flanking markers

LOD

PVE (%)

Add

LL

P2

qLL-2B

2B

CP18

41

40.5–42.5

TP47199-TP94214

4.44

5.38

-0.11

P2

qLL-6D-1a

6D

CP18

40

39.5–40.5

TP87775-TP35294

4.92

6.09

0.12

P2

qLL-6D-2a

6D

CP19

40

38.5–40.5

TP87775-TP35294

5.23

3.95

0.12

P2

qLL-6D-3a

6D

BLUP

40

39.5–40.5

TP87775-TP35294

5.22

6.88

0.1

LW

P2

qLW-2C

2C

LF19

61

59.5–62.5

TP77362-TP23382

3.97

6.08

-0.08

P2

qLW-6B

6B

LF19

24

23.5–24.5

TP66725-TP11462

4.77

7.91

-0.1

P2

qLW-6D-1

6D

LF18

14

13.5–15.5

TP61730-TP2500

6.06

11.92

0.11

P2

qLW-6D-2b

6D

CP18

27

26.5–28.5

TP53281-TP57492

18.87

22.45

0.14

P2

qLW-6D-3c

6D

CP19

28

27.5–28.5

TP57492-TP29932

10.8

11.5

0.1

P2

qLW-6D-4c

6D

BLUP

28

26.5–28.5

TP57492-TP29932

17.77

22.41

0.11

P2

qLW-6D-5d

6D

LF18

34

32.5–35.5

TP24250-TP97699

6.39

12.73

0.11

P1

qLW-7D

7D

LF19

57

56.5–57.5

TP55339-TP53717

6.09

9.19

-0.11

P1

qLW-8A

8A

CP18

49

46.5–50.5

TP68418-TP59234

5.5

2.37

-0.07

P2

qLW-8B

8B

CP18

89

87.5–90.5

TP88178-TP51967

4.15

4.27

-0.06

LA

P1

qLA-4A

4A

CP18

158

154.5–161.5

TP13527-TP67107

4.61

5.35

-0.29

P2

qLA-6D-1b

6D

LF19

27

26.5–28.5

TP53281-TP57492

4.89

9.13

0.41

P2

qLA-6D-2b

6D

BLUP

27

26.5–28.5

TP53281-TP57492

13.77

18.14

0.36

P2

qLA-6D-3c

6D

CP19

28

27.5–28.5

TP57492-TP29932

11.08

9.69

0.28

P2

qLA-6D-4d

6D

LF18

34

32.5–34.5

TP24250-TP97699

9.85

15.17

0.59

P2

qLA-6D-5

6D

CP18

39

38.5–40.5

TP82945-TP87775

21.52

18.88

0.57

P1

qLA-7D-1

7D

BLUP

49

48.5–49.5

TP26299-TP62590

15.54

18.14

-0.39

P2

qLA-7D-2

7D

CP19

45

43.5–46.5

TP49287-TP39017

3.87

3.49

-0.17

P2

qLA-7D-3

7D

CP19

90

88.5–90.5

TP32383-TP53416

4.62

4.1

0.18

P2

qLA-8C

8C

CP18

126

125.5–126.5

TP82035-TP43195

5.65

3.97

0.27

  1. QTL, q + trait abbreviation + chromosome + QTL number, e.g., qLL-6D-1, corresponds to the first QTL for LL on chromosome 6D; CP and LF refer to the two locations—Changping and Langfang, respectively; Chr, Chromosome; LSI 1-LOD support interval in cM unit; Flanking markers interval of the QTL; LOD Logarithm of odds for each QTL; PVE, the percentage of the phenotypic variation explained by QTL; Add, the additive effects of the QTL. QTLs at the same genetic position were marked with the same lowercase letter; QTLs with PVE > 10% were underlined