Table 8 Interspecific comparison of Japanese larch and Kuril larch ORFs
| Â | Intersection of Venn diagram | Specific to Larix kaempferi | Specific to Larix gmelinii var. japonica | |
|---|---|---|---|---|
Number of clusters | 19,813 | 7 | 5 | |
| Â | Larix kaempferi | Larix gmelinii var. japonica | Â | Â |
Number of ORFs | ||||
 PacBio Iso-seq | 13,150 | 14,232 | 12 | 8 |
 Illumina RNA-seq | 9,421 | 8,435 | 21 | 7 |
 Total | 22,571 | 22,667 | 33 | 15 |
Single clusters | ||||
 PacBio Iso-seq | - | - | 19,448 | 13,250 |
 Illumina RNA-seq | - | - | 8,638 | 2,752 |
 Total | - | - | 28,086 | 16,002 |
Homologs to gbpln in NCBI | ||||
 PacBio Iso-seq | 11,908 | 12,917 | 13,098 | 9,613 |
 Illumina RNA-seq | 8,427 | 7,547 | 5,821 | 1,921 |
 Total | 20,335 | 20,464 | 18,919 | 11,534 |
No hits against NR database | ||||
 PacBio Iso-seq | 932 | 1,052 | 5,057 | 3,354 |
 Illumina RNA-seq | 743 | 665 | 2,280 | 759 |
 Total | 1,675 | 1,717 | 7,337 | 4,113 |
BUSCO v3 (odb10; 1,375) | ||||
 Complete (%) | 88.5 | 90.1 | 16.5 | 9.9 |
  Complete and single-copy (%) | 84.6 | 84.9 | 14.5 | 9.2 |
  Complete and duplicated (%) | 3.9 | 5.2 | 2.0 | 0.7 |
 Fragmented (%) | 3 | 1.7 | 13.1 | 13.5 |
 Missing (%) | 8.5 | 8.2 | 70.4 | 76.6 |