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Table 6 Statistics and completeness of the ORFs predicted from RNA-seq short-reads

From: Comprehensive collection of genes and comparative analysis of full-length transcriptome sequences from Japanese larch (Larix kaempferi) and Kuril larch (Larix gmelinii var. japonica)

 

Larix kaempferi

Larix gmelinii var. japonica

Number of ORFs

27,130

20,207

Total length (bp)

27,027,003

22,448,592

Average (bp)

996

1,111

Maximum (bp)

14,493

14,493

Minimum (bp)

255

255

N50 (bp)

1,341

1,500

G + C%

45.0

44.6

A

7,714,114

6,465,651

T

7,152,243

5,973,339

G

6,610,707

5,484,799

C

5,549,939

4,524,803

BUSCO v3 (odb10; 1375)

Complete (%)

82.0

87.5

 Complete and single-copy (%)

79.5

84.7

 Complete and duplicated (%)

2.5

2.8

Fragmented (%)

6.7

2.8

Missing (%)

11.3

9.7