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Table 5 Summary of unigenes constructed from short-read transcript data

From: Comprehensive collection of genes and comparative analysis of full-length transcriptome sequences from Japanese larch (Larix kaempferi) and Kuril larch (Larix gmelinii var. japonica)

 

Larix kaempferi

Larix gmelinii var. japonica

 

Contigs

Unitranscript

Unigene

Contigs

Unitranscript

Unigene

Number of sequences

912,369

118,141

58,396

1,133,931

72,294

36,972

Total length (bases)

619,249,181

154,148,063

68,361,245

744,563,879

98,330,037

49,327,511

Average (bases)

679

1,305

1,171

657

1,360

1,334

Maximum (bases)

17,703

17,703

17,703

19,838

18,429

18,429

Minimum (bases)

172

172

188

170

180

185

N50 (bases)

1,112

2,311

2,246

1,016

2,374

2,474

G + C%

44.2

41.7

41.8

43.7

41.8

41.7

A

172,604,111

44,911,691

19,905,530

209,250,990

28,589,958

14,364,447

T

172,848,343

44,883,640

19,908,628

209,910,416

28,611,870

14,387,526

G

135,206,494

31,849,992

14,133,013

160,755,371

20,361,148

10,199,216

C

138,590,233

32,502,740

14,414,074

164,647,102

20,767,061

10,376,319