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Table 4 Summary of collections to short-read of transcript data

From: Comprehensive collection of genes and comparative analysis of full-length transcriptome sequences from Japanese larch (Larix kaempferi) and Kuril larch (Larix gmelinii var. japonica)

  

Larix kaempferi (LK)

 

Larix gmelinii var. japonica (LG)

 

Sample name

Total reads

Total read bases

GC (%)

AT (%)

Q20 (%)

Q30 (%)

Accession

Sample name

Total reads

Total read bases

GC (%)

AT (%)

Q20 (%)

Q30 (%)

Accession

LK

GFE33389

144,905,924

14,635,498,324

45.26

54.74

96.43

94.07

DRA: 011937, Experiment: DRX279213

LG

GFF08127

149,916,032

15,141,519,232

45.45

54.55

95.30

92.09

DRA: 011937, Experiment: DRX279223

LK

GFE02991

159,873,888

16,146,262,688

45.22

54.78

95.46

92.34

DRA: 011937, Experiment: DRX279214

LG

GFF03187

178,050,660

17,983,116,660

45.05

54.95

94.61

91.03

DRA: 011937, Experiment: DRX279221

LK

GEF32200

124,904,528

12,615,357,328

45.49

54.51

99.00

97.34

DRA: 011937, Experiment: DRX279215

LG

GFF03199

171,178,302

17,289,008,502

44.79

55.21

95.55

92.45

DRA: 011937, Experiment: DRX279220

LK

GEF32203

127,808,704

12,908,679,104

45.96

54.04

99.01

97.34

DRA: 011937, Experiment: DRX279216

LG

GFF08097

180,587,588

18,239,364,388

45.33

54.67

95.38

92.17

DRA: 011937, Experiment: DRX279222

LK

GFE02901

131,108,822

13,241,991,022

45.08

54.92

99.02

97.37

DRA: 011937, Experiment: DRX279217

LG

GFF03179

154,611,148

15,615,725,948

44.87

55.13

96.16

93.65

DRA: 011937, Experiment: DRX279224

LK

GFE02910

135,559,950

13,691,554,950

45.29

54.71

98.94

97.18

DRA: 011937, Experiment: DRX279218

LG

GFF03183

137,362,464

13,873,608,864

44.87

55.13

96.18

93.69

DRA: 011937, Experiment: DRX279225

LK

GFE02911

135,061,888

13,641,250,688

45.28

54.72

99.03

97.39

DRA: 011937, Experiment: DRX279219

LG

GFF08058

123,067,288

12,429,796,088

45.06

54.94

96.04

93.69

DRA: 011937, Experiment: DRX279226

Total

959,223,704

96,880,594,104

-

-

-

-

-

Total

1,094,773,482

110,572,139,682

-

-

-

-

-

After normalization

182,578,084

-

-

-

-

-

-

After normalization

209,039,560

-

-

-

-

-

-