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Table 1 Differential expression of structural genes in each comparison group

From: Transcriptomic and metabolomic profiling of flavonoid biosynthesis provides novel insights into petals coloration in Asian cotton (Gossypium arboreum L.)

GeneID

Gene Name

Description

Correlation with total anthocyanin

p-value

W_Flo

Y_Flo

P_Flo

W_Flo vs Y_Flo

W_Flo vs P_Flo

Y_Flo vs P_Flo

Log2FC

Type

Fdr

Log2FC

Type

Fdr

Log2FC

Type

Fdr

Ga09G1700

PAL

Phenylalanine ammonia-lyase

-0.97470

8.27E-06

12.55

12.09

4.93

-

-

-

-

-

-

-1.19

down

2.13E-12

Ga05G1511

4CL1

4-coumarate–CoA ligase 1

-0.83056

5.56E-03

13.28

18.49

5.80

-

-

-

-

-

-

-1.57

down

2.14E-20

Ga05G1789

ANR

Anthocyanidin reductase ((2S)-flavan-3-ol-forming)

-0.81549

7.38E-03

4.73

3.52

1.68

-

-

-

-1.13

down

1.71E-02

-

-

-

Ga12G1133

LAR

Leucoanthocyanidin reductase

-0.80036

9.57E-03

7.61

2.70

0.78

-1.18

down

8.57E-04

-2.93

down

9.05E-11

-1.72

down

7.02E-03

Ga11G2554

RT

Anthocyanidin 3-O-glucosyltransferase

-0.78599

1.20E-02

38.82

14.45

6.44

-1.12

down

1.06E-20

-2.24

down

1.52E-50

-1.08

down

4.49E-08

Ga11G0075

PAL

Phenylalanine ammonia-lyase

-0.75434

1.88E-02

51.24

19.35

11.38

-1.12

down

7.31E-44

-1.82

down

2.61E-81

-

-

-

Ga05G0055

4CL1

4-coumarate–CoA ligase 1

-0.68992

3.97E-02

6.69

0.93

0.21

-2.56

down

8.55E-14

-4.63

down

5.37E-18

-

-

-

Ga08G1805

4CLL6

4-coumarate–CoA ligase-like 6

-0.62496

7.19E-02

3.19

1.44

1.18

-

-

-

-1.07

down

8.31E-03

-

-

-

Ga04G1879

FLS

Flavonol synthase/flavanone 3-hydroxylase

-0.57063

1.09E-01

263.99

92.58

103.27

-1.18

down

3.53E-84

-

-

-

-

-

-

Ga09G0006

CHS

Chalcone synthase

-0.42007

2.60E-01

1.29

0.14

0.37

-2.82

down

1.13E-02

-

-

-

-

-

-

Ga01G2437

4CLL7

4-coumarate–CoA ligase-like 7

-0.25863

5.02E-01

452.81

760.47

492.50

1.04

up

7.39E-250

-

-

-

-

-

-

Ga11G2145

F3H

Naringenin,2-oxoglutarate 3-dioxygenase

0.77845

1.35E-02

28.24

55.01

63.90

1.28

up

2.03E-30

-

-

-

-

-

-

Ga05G2477

FL

Flavonol synthase/flavanone 3-hydroxylase

0.90111

9.08E-04

1.23

30.54

53.94

4.99

up

2.68E-53

-

-

-

-

-

-

Ga04G1997

CHI3

Probable chalcone–flavonone isomerase 3

0.91664

5.07E-04

95.52

64.54

179.41

-

-

-

-

-

-

1.53

up

4.59E-77

Ga05G2037

DFR

Dihydroflavonol 4-reductase

0.97277

1.07E-05

156.36

193.12

264.42

-

-

-

-

-

-

-

-

-

Ga02G1655

PAL

Phenylalanine ammonia-lyase

0.98615

1.02E-06

331.23

330.62

846.62

-

-

-

-

-

-

1.46

up

0.00E + 00

Ga05G3486

CHS2

Chalcone synthase 2

0.98839

5.49E-07

372.03

1298.10

3579.91

2.12

up

0.00E + 00

-

-

-

1.55

up

0.00E + 00

Ga04G0847

PAL

Phenylalanine ammonia-lyase

0.98949

3.87E-07

32.18

33.30

140.68

-

-

-

-

-

-

2.19

up

0.00E + 00

Ga06G0096

DFR

Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase

0.99094

2.31E-07

164.75

389.70

980.76

1.57

up

1.27E-227

-

-

-

1.41

up

0.00E + 00

Ga10G1446

CHS1

Chalcone synthase 1

0.99131

1.99E-07

328.25

470.70

970.32

-

-

-

-

-

-

1.13

up

1.34E-246

Ga02G0536

UFGT

Anthocyanidin 3-O-glucosyltransferase 2

0.99231

1.31E-07

3950.94

4179.42

11,682.95

-

-

-

-

-

-

1.58

up

0.00E + 00

Ga13G0234

CHI

Chalcone–flavonone isomerase

0.99702

4.77E-09

348.55

421.68

1130.39

-

-

-

-

-

-

1.46

up

6.72E-282

Ga10G1445

CHS1

Chalcone synthase 1

0.99794

1.31E-09

5419.04

7134.36

15,854.65

-

-

-

-

-

-

1.24

up

0.00E + 00

Ga08G2083

ANT17

Leucoanthocyanidin dioxygenase

0.99877

2.17E-10

3130.36

4472.86

14,427.07

-

-

-

-

-

-

1.77

up

0.00E + 00

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BMC Plant Biology

ISSN: 1471-2229

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