Table 2 The potential miRNA target sites of LcCCO genes
miRNA | Target | Expectation | miRNA Length | Target_start | Target end | Inhibition | Multiplicity |
|---|---|---|---|---|---|---|---|
Lc-miR408b/d/f | LcCCD1 | 3.5 | 20 | 2577 | 2597 | Cleavage | 1 |
Lc-miR172h | LcCCD1 | 4 | 20 | 2445 | 2465 | Cleavage | 1 |
Lc-miR408a/c/e | LcCCD1 | 4.5 | 20 | 2578 | 2598 | Cleavage | 1 |
Lc-miR160c/d | LcCCD1 | 5 | 20 | 2057 | 2077 | Cleavage | 1 |
Lc-miR172a/b/c/d/e/i/j | LcCCD1 | 5 | 20 | 2445 | 2465 | Cleavage | 1 |
Lc-miRN19 | LcCCD1 | 5 | 20 | 3794 | 3814 | Cleavage | 1 |
Lc-miRN58 | LcCCD1 | 5 | 21 | 1942 | 1963 | Cleavage | 1 |
Lc-miRN49 | LcCCDlike-a | 4 | 21 | 2941 | 2962 | Cleavage | 2 |
Lc-miRN49 | LcCCDlike-a | 4.5 | 21 | 1267 | 1288 | Cleavage | 2 |
Lc-miR156g/l | LcCCDlike-a | 5 | 20 | 80 | 101 | Cleavage | 1 |
Lc-miR397a/b | LcCCDlike-a | 5 | 20 | 1752 | 1772 | Cleavage | 2 |
Lc-miR397a/b | LcCCDlike-a | 5 | 20 | 3351 | 3371 | Cleavage | 2 |
Lc-miR397c/d | LcCCDlike-a | 5 | 19 | 1753 | 1772 | Cleavage | 2 |
Lc-miR397c/d | LcCCDlike-a | 5 | 19 | 3352 | 3371 | Cleavage | 2 |
Lc-miRN24 | LcCCDlike-a | 5 | 20 | 323 | 343 | Cleavage | 1 |
Lc-miRN58 | LcCCDlike-a | 5 | 21 | 1331 | 1352 | Translation | 2 |
Lc-miRN58 | LcCCDlike-a | 5 | 21 | 3005 | 3026 | Translation | 2 |
Lc-miRN53 | LcCCD4 | 4.5 | 20 | 1148 | 1168 | Cleavage | 1 |
Lc-miR166a | LcCCD4 | 5 | 20 | 1180 | 1200 | Translation | 1 |
Lc-miRN19 | LcCCD4a1 | 4.5 | 20 | 821 | 841 | Cleavage | 1 |
Lc-miRN23 | LcCCD4a1 | 4.5 | 21 | 704 | 725 | Cleavage | 1 |
Lc-miRN56a/b | LcCCD4a1 | 4.5 | 20 | 1120 | 1140 | Cleavage | 1 |
Lc-miRN19 | LcCCD4a2 | 4.5 | 20 | 821 | 841 | Cleavage | 1 |
Lc-miRN23 | LcCCD4a2 | 4.5 | 21 | 704 | 725 | Cleavage | 1 |
Lc-miRN56a/b | LcCCD4a2 | 4.5 | 20 | 1120 | 1140 | Cleavage | 1 |
Lc-miRN56a/b | LcCCD4b | 4.5 | 20 | 1099 | 1119 | Cleavage | 1 |
Lc-miRN23 | LcCCD4b | 5 | 21 | 683 | 704 | Cleavage | 1 |
Lc-miRN26a/b | LcCCD4c1 | 4 | 20 | 882 | 902 | Cleavage | 1 |
Lc-miRN26a/b | LcCCD4c2 | 3.5 | 20 | 1707 | 1727 | Cleavage | 1 |
Lc-miR6833 | LcCCD4c2 | 4.5 | 20 | 450 | 470 | Cleavage | 1 |
Lc-miR171b/c/d/g/h/j/o/sq | LcCCD4c2 | 5 | 20 | 472 | 492 | Cleavage | 1 |
Lc-miRN23 | LcCCD4c2 | 5 | 21 | 692 | 713 | Cleavage | 1 |
Lc-miRN45 | LcCCD4c2 | 5 | 20 | 1453 | 1473 | Translation | 1 |
Lc-miR156c/r | LcCCD7 | 5 | 20 | 1518 | 1538 | Cleavage | 1 |
Lc-miRN34 | LcCCD8a | 5 | 20 | 1518 | 1538 | Cleavage | 1 |
Lc-miRN56a/b | LcCCD8a | 5 | 20 | 1621 | 1642 | Cleavage | 1 |
Lc-miR166b/e/f/g/h/i/j/l/m/n/o | LcCCD8b | 4.5 | 20 | 824 | 844 | Cleavage | 1 |
Lc-miR166c/k | LcCCD8b | 4.5 | 20 | 824 | 844 | Cleavage | 1 |
Lc-miRN13 | LcCCD8b | 5 | 20 | 873 | 893 | Cleavage | 1 |
Lc-miR156e | LcNCED1 | 4 | 19 | 667 | 686 | Cleavage | 1 |
Lc-miR156a/b/o/p/q | LcNCED1 | 5 | 19 | 667 | 686 | Cleavage | 1 |
Lc-miR156f | LcNCED1 | 5 | 20 | 667 | 687 | Cleavage | 1 |
Lc-miR156k/s | LcNCED1 | 5 | 19 | 667 | 686 | Cleavage | 1 |
Lc-miRN16a/b | LcNCED1 | 5 | 21 | 412 | 433 | Translation | 1 |
Lc-miRN54a/b | LcNCED1 | 5 | 20 | 1016 | 1036 | Translation | 1 |
Lc-miR395a/b/c | LcNCED2 | 4.5 | 20 | 948 | 968 | Cleavage | 1 |
Lc-miRN24 | LcNCED2 | 5 | 20 | 687 | 707 | Cleavage | 1 |
Lc-miRN45 | LcNCED2 | 5 | 20 | 1241 | 1261 | Cleavage | 1 |
Lc-miRN53 | LcNCED2 | 5 | 20 | 1654 | 1674 | Translation | 1 |